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This page was generated on 2021-10-15 15:06:02 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the dexus package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dexus.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 492/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Guenter Klambauer
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: dexus |
| Version: 1.32.0 |
| Command: rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dexus.buildbin-libdir dexus_1.32.0.tar.gz |
| StartedAt: 2021-10-15 08:58:11 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 08:59:42 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 91.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: dexus_1.32.0.zip |
| PackageFileSize: 3.947 MiB |
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### Running command:
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### rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dexus.buildbin-libdir dexus_1.32.0.tar.gz
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install for i386
* installing *source* package 'dexus' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
const double DEFAULT_R = 20; // R value used when re-setting clusters
^~~~~~~~~
dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
const double DEFAULT_R = 20; // R value used when re-setting clusters
^~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/dexus.buildbin-libdir/00LOCK-dexus/00new/dexus/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'dexus'
finding HTML links ... done
DEXUSResult-class html
DEXUSResult-subset html
INI html
INIThreshold-set html
accessors html
countsBottomly html
countsGilad html
countsLi html
countsMontgomery html
countsPickrell html
dexss html
dexus html
dexus.parallel html
getSizeNB html
normalizeData html
plot html
sort html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'dexus' is deprecated and will be removed from Bioconductor
version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'dexus' is deprecated and will be removed from Bioconductor
version 3.14
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'dexus' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dexus.cpp -o dexus.o
dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
const double DEFAULT_R = 20; // R value used when re-setting clusters
^~~~~~~~~
dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)':
dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable]
const double DEFAULT_R = 20; // R value used when re-setting clusters
^~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/dexus.buildbin-libdir/dexus/libs/x64
** testing if installed package can be loaded
Warning: Package 'dexus' is deprecated and will be removed from Bioconductor
version 3.14
* MD5 sums
packaged installation of 'dexus' as dexus_1.32.0.zip
* DONE (dexus)