| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the biscuiteer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biscuiteer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 195/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biscuiteer 1.6.0 (landing page) "Jacob Morrison"
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: biscuiteer |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/biscuiteer_1.6.0.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.6.0.zip && rm biscuiteer_1.6.0.tar.gz biscuiteer_1.6.0.zip |
| StartedAt: 2021-10-14 11:04:10 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:08:00 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 229.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/biscuiteer_1.6.0.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.6.0.zip && rm biscuiteer_1.6.0.tar.gz biscuiteer_1.6.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
8 4607k 8 383k 0 0 1095k 0 0:00:04 --:--:-- 0:00:04 1095k
65 4607k 65 3038k 0 0 2247k 0 0:00:02 0:00:01 0:00:01 2247k
100 4607k 100 4607k 0 0 2550k 0 0:00:01 0:00:01 --:--:-- 2549k
install for i386
* installing *source* package 'biscuiteer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** help
*** installing help indices
converting help for package 'biscuiteer'
finding HTML links ... done
CpGindex html
ENSR_subset.hg19 html
ENSR_subset.hg38 html
GRCh37.chromArm html
GRCh38.chromArm html
H9state23unmeth.hg19 html
H9state23unmeth.hg38 html
HMM_CpG_islands.hg19 html
HMM_CpG_islands.hg38 html
RRBSeq html
WGBSage html
WGBSeq html
atRegions html
binCoverage html
biscuitMetadata html
biscuiteer-methods html
biscuiteer-package html
byChromArm html
byExtremality html
checkBiscuitBED html
clocks html
condenseSampleNames html
extremality html
fexpit html
filterLoci html
fixAge html
fixNAs html
flogit html
getClock html
getLogitFracMeth html
grToSeg html
hg19.chromArm html
hg38.chromArm html
makeBSseq html
readBiscuit html
segToGr html
seqinfo.hg19 html
seqinfo.hg38 html
seqinfo.mm10 html
simplifySampleNames html
summarizeBsSeqOver html
unionize html
** building package indices
** installing vignettes
'biscuiteer.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'biscuiteer' ...
** testing if installed package can be loaded
Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer'
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
* MD5 sums
packaged installation of 'biscuiteer' as biscuiteer_1.6.0.zip
* DONE (biscuiteer)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'biscuiteer' successfully unpacked and MD5 sums checked