| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:35 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the antiProfiles package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/antiProfiles.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 72/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| antiProfiles 1.32.0 (landing page) Hector Corrada Bravo
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: antiProfiles |
| Version: 1.32.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:antiProfiles.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings antiProfiles_1.32.0.tar.gz |
| StartedAt: 2021-10-14 08:52:08 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:52:27 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 19.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: antiProfiles.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:antiProfiles.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings antiProfiles_1.32.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/antiProfiles.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘antiProfiles/DESCRIPTION’ ... OK
* this is package ‘antiProfiles’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘antiProfiles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ev: no visible global function definition for ‘predict’
ev: no visible global function definition for ‘smoothScatter’
ev : f1: no visible global function definition for ‘predict’
ev: no visible global function definition for ‘curve’
Undefined global functions or variables:
curve predict smoothScatter
Consider adding
importFrom("graphics", "curve", "smoothScatter")
importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.13-bioc/meat/antiProfiles.Rcheck/00check.log’
for details.
antiProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL antiProfiles ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘antiProfiles’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (antiProfiles)
antiProfiles.Rcheck/antiProfiles-Ex.timings
| name | user | system | elapsed | |
| antiprofile-class | 0.532 | 0.048 | 0.587 | |
| antiprofilestats-class | 0.191 | 0.241 | 0.431 | |
| apCount-methods | 0.080 | 0.016 | 0.096 | |
| apReorder-methods | 0.080 | 0.019 | 0.101 | |
| apStats | 0.080 | 0.000 | 0.081 | |
| buildAntiProfile-methods | 0.082 | 0.001 | 0.083 | |
| ev | 0.088 | 0.000 | 0.089 | |
| tissueSpecAntiprofile-class | 0.104 | 0.000 | 0.104 | |