| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:27 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the YAPSA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/YAPSA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2035/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| YAPSA 1.18.0 (landing page) Daniel Huebschmann
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: YAPSA |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/YAPSA_1.18.0.tar.gz && rm -rf YAPSA.buildbin-libdir && mkdir YAPSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=YAPSA.buildbin-libdir YAPSA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL YAPSA_1.18.0.zip && rm YAPSA_1.18.0.tar.gz YAPSA_1.18.0.zip |
| StartedAt: 2021-10-14 11:00:11 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:02:17 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 125.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/YAPSA_1.18.0.tar.gz && rm -rf YAPSA.buildbin-libdir && mkdir YAPSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=YAPSA.buildbin-libdir YAPSA_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL YAPSA_1.18.0.zip && rm YAPSA_1.18.0.tar.gz YAPSA_1.18.0.zip
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install for i386
* installing *source* package 'YAPSA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'YAPSA'
finding HTML links ... done
GenomeOfNl_raw html
LCD html
LCD_SMC html
LCD_complex_cutoff html
MutCat_indel_df html
SMC html
SMC_perPID html
YAPSA html
add_annotation html
add_as_fist_to_list html
aggregate_exposures_by_category html
annotate_intermut_dist_PID html
annotate_intermut_dist_cohort html
annotation_exposures_barplot html
annotation_exposures_list_barplot html
annotation_heatmap_exposures html
attribute_nucleotide_exchanges html
attribute_sequence_contex_indel html
attribution_of_indels html
build_gene_list_for_pathway html
classify_indels html
compare_SMCs html
compare_exposures html
compare_expousre_sets html
compare_sets html
compare_to_catalogues html
complex_heatmap_exposures html
computeLogLik html
compute_comparison_stat_df html
confIntExp html
confidence_indel_calulation html
confidence_indel_only_calulation html
correct_rounded html
cosineDist html
cosineMatchDist html
create_indel_mut_cat_from_df html
create_indel_mutation_catalogue_from_df
html
create_mutation_catalogue_from_VR html
create_mutation_catalogue_from_df html
finding level-2 HTML links ... done
cut_breaks_as_intervals html
cutoffs html
cutoffs_pcawg html
deriveSigInd_df html
disambiguateVector html
enrichSigs html
exampleINDEL_YAPSA html
exampleYAPSA html
exchange_colour_vector html
exome_mutCatRaw_df html
exposures_barplot html
extract_names_from_gene_list html
find_affected_PIDs html
getSequenceContext html
get_extreme_PIDs html
hclust_exposures html
logLikelihood html
lymphomaNature2013_mutCat_df html
makeVRangesFromDataFrame html
make_catalogue_strata_df html
make_comparison_matrix html
make_strata_df html
make_subgroups_df html
melt_exposures html
merge_exposures html
normalizeMotifs_otherRownames html
normalize_df_per_dim html
plotExchangeSpectra html
plotExchangeSpectra_indel html
plotExposuresConfidence html
plotExposuresConfidence_indel html
plot_SMC html
plot_exposures html
plot_strata html
read_entry html
relateSigs html
repeat_df html
round_precision html
run_SMC html
run_annotate_vcf_pl html
run_comparison_catalogues html
run_comparison_general html
run_kmer_frequency_correction html
run_kmer_frequency_normalization html
run_plot_strata_general html
shapiro_if_possible html
sigs html
sigs_pcawg html
split_exposures_by_subgroups html
stat_plot_subgroups html
stat_test_SMC html
stat_test_subgroups html
stderrmean html
sum_over_list_of_df html
targetCapture_cor_factors html
temp_trellis_rainfall_plot html
testSigs html
test_exposureAffected html
test_gene_list_in_exposures html
transform_rownames_R_to_MATLAB html
translate_to_hg19 html
trellis_rainfall_plot html
trellis_rainfall_plot_old html
variateExp html
variateExpSingle html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'YAPSA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'YAPSA' as YAPSA_1.18.0.zip
* DONE (YAPSA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'YAPSA' successfully unpacked and MD5 sums checked