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This page was generated on 2021-10-15 15:06:55 -0400 (Fri, 15 Oct 2021).

BUILD results for Sushi on machv2

To the developers/maintainers of the Sushi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Sushi.git to
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raw results

Package 1875/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Sushi 1.30.0  (landing page)
Douglas H Phanstiel
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/Sushi
git_branch: RELEASE_3_13
git_last_commit: 817131b
git_last_commit_date: 2021-05-19 12:04:34 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: Sushi
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Sushi
StartedAt: 2021-10-14 15:14:07 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 15:20:06 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 359.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Sushi
###
##############################################################################
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* checking for file ‘Sushi/DESCRIPTION’ ... OK
* preparing ‘Sushi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Sushi.Rnw’ using Sweave
Loading required package: zoo

Attaching package: ‘zoo’

The following objects are masked from ‘package:base’:

    as.Date, as.Date.numeric

Loading required package: biomaRt
Ensembl site unresponsive, trying www mirror
Ensembl site unresponsive, trying www mirror

Error: processing vignette 'Sushi.Rnw' failed with diagnostics:
 chunk 33 
Error in bmRequest(request = request, httr_config = martHTTRConfig(mart),  : 
  Internal Server Error (HTTP 500).

--- failed re-building ‘Sushi.Rnw’

SUMMARY: processing the following file failed:
  ‘Sushi.Rnw’

Error: Vignette re-building failed.
Execution halted