Mike Smith
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Rhdf5lib |
| git_branch: RELEASE_3_13 |
| git_last_commit: 500fdf6 |
| git_last_commit_date: 2021-07-05 05:57:18 -0400 (Mon, 05 Jul 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Rhdf5lib package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhdf5lib.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1576/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rhdf5lib 1.14.2 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Rhdf5lib |
| Version: 1.14.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Rhdf5lib_1.14.2.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.14.2.zip && rm Rhdf5lib_1.14.2.tar.gz Rhdf5lib_1.14.2.zip |
| StartedAt: 2021-10-14 07:11:53 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:13:18 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 85.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Rhdf5lib_1.14.2.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.14.2.zip && rm Rhdf5lib_1.14.2.tar.gz Rhdf5lib_1.14.2.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
61 9294k 61 5734k 0 0 6469k 0 0:00:01 --:--:-- 0:00:01 6472k
100 9294k 100 9294k 0 0 7591k 0 0:00:01 0:00:01 --:--:-- 7600k
install for i386
* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "winlib-8.3.0/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib-8.3.0/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib-8.3.0/i386/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl.a"
cp "winlib-8.3.0/i386/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/i386/libszip.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
"C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/
Copying Winlibs
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl
[1] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/README.md"
[2] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/curl.h"
[3] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/curlver.h"
[4] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/easy.h"
[5] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/mprintf.h"
[6] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/multi.h"
[7] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h"
[8] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/system.h"
[9] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h"
[10] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/urlapi.h"
[11] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a"
[12] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcurl.a"
[13] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssh2.a"
[14] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssl.a"
[15] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a"
[16] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a"
[17] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a"
[18] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a"
[19] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a"
[20] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libcurl.a"
[21] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libssh2.a"
[22] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libssl.a"
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcrypto.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcurl.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssh2.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssl.a
ARCH: i386/
[[1]]
[1] TRUE
[[2]]
[1] TRUE
[[3]]
[1] TRUE
[[4]]
[1] TRUE
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//i386/libhdf5.a winlib-8.3.0//i386/libszip.a -lpsapi -lz -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rhdf5lib'
finding HTML links ... done
Rhdf5lib html
dot-curlStatus html
dot-getDynamicLinks html
getHdf5Version html
pkgconfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp "winlib-8.3.0/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib-8.3.0/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib-8.3.0/x64/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl.a"
cp "winlib-8.3.0/x64/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/x64/libszip.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
"C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/
Copying Winlibs
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl
[1] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/README.md"
[2] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/curl.h"
[3] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/curlver.h"
[4] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/easy.h"
[5] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/mprintf.h"
[6] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/multi.h"
[7] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h"
[8] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/system.h"
[9] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h"
[10] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/urlapi.h"
[11] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a"
[12] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libcurl.a"
[13] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libssh2.a"
[14] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libssl.a"
[15] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a"
[16] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a"
[17] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a"
[18] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a"
[19] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a"
[20] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcurl.a"
[21] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssh2.a"
[22] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssl.a"
C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcrypto.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcurl.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssh2.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssl.a
ARCH: x64/
[[1]]
[1] TRUE
[[2]]
[1] TRUE
[[3]]
[1] TRUE
[[4]]
[1] TRUE
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//x64/libhdf5.a winlib-8.3.0//x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_1.14.2.zip
* DONE (Rhdf5lib)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Rhdf5lib' successfully unpacked and MD5 sums checked