Zicheng Hu
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/RImmPort |
| git_branch: RELEASE_3_13 |
| git_last_commit: 1565e15 |
| git_last_commit_date: 2021-05-19 12:18:07 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the RImmPort package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RImmPort.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1584/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RImmPort 1.20.0 (landing page) Zicheng Hu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RImmPort |
| Version: 1.20.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RImmPort.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RImmPort_1.20.0.tar.gz |
| StartedAt: 2021-10-15 04:36:31 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:37:46 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 75.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RImmPort.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RImmPort.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RImmPort_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/RImmPort.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RImmPort/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RImmPort' version '1.20.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RImmPort' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for 'dbListTables' Undefined global functions or variables: dbListTables * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/RImmPort.Rcheck/00check.log' for details.
RImmPort.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/RImmPort_1.20.0.tar.gz && rm -rf RImmPort.buildbin-libdir && mkdir RImmPort.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RImmPort.buildbin-libdir RImmPort_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RImmPort_1.20.0.zip && rm RImmPort_1.20.0.tar.gz RImmPort_1.20.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
79 1909k 79 1509k 0 0 1637k 0 0:00:01 --:--:-- 0:00:01 1636k
100 1909k 100 1909k 0 0 1757k 0 0:00:01 0:00:01 --:--:-- 1759k
install for i386
* installing *source* package 'RImmPort' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RImmPort'
finding HTML links ... done
AE html
APMH html
Adverse-Events-Domain html
Associated-Persons-Medical-History-Domain
html
CM html
Cellular-Quantification-Domain html
Concomitant-Medications-Domain html
DM html
DV html
Demographics-Domain html
EX html
Events-class html
Exposure-Domain html
FA html
Findings-About-Domain html
Findings-class html
Genetics-Findings-Domain html
Interventions-class html
LB html
Laboratory-Test-Results-Domain html
MH html
Medical-History-Domain html
Nucleic-Acid-Quantification-Domain html
PE html
PF html
Physical-Examination-Domain html
Protein-Quantification-Domain html
Protocol-Deviations-Domain html
QS html
Questionnaires-Domain html
RImmPort html
SR html
SU html
SUPP html
SUPPDV html
SUPPFA html
SUPPLB html
SUPPMH html
SUPPPE html
SUPPPF html
SUPPVS html
SUPPZA html
SUPPZB html
SUPPZC html
SUPPZD html
SV html
Skin-Response-Domain html
SpecialPurpose-class html
Study-class html
Subject-Visits-Domain html
Substance-Use-Domain html
TA html
TI html
TS html
TV html
Titer-Assay-Results-Domain html
Trial-Arms-Domain html
Trial-Inclusion-Exclusion-Criteria-Domain
html
Trial-Summary-Domain html
Trial-Visits-Domain html
TrialDesign-class html
VS html
Vital-Signs-Domain html
ZA html
ZB html
ZC html
ZD html
buildNewSqliteDb html
getAssayDataOfStudies html
getDomainCode html
getDomainDataOfStudies html
getListOfAssayTypes html
getListOfDomains html
getListOfStudies html
getStudiesWithSpecificAssayData html
getStudiesWithSpecificDomainData html
getStudy html
loadSerializedStudyData html
mergeDomainAndSupplemental html
serialzeStudyData html
setImmPortDataSource html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RImmPort' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RImmPort' as RImmPort_1.20.0.zip
* DONE (RImmPort)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'RImmPort' successfully unpacked and MD5 sums checked
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RImmPort.Rcheck/examples_i386/RImmPort-Ex.timings
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RImmPort.Rcheck/examples_x64/RImmPort-Ex.timings
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