| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:45 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the OLIN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1293/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.70.0 (landing page) Matthias Futschik
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: OLIN |
| Version: 1.70.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OLIN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OLIN_1.70.0.tar.gz |
| StartedAt: 2021-10-14 21:50:53 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 21:52:11 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 78.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OLIN.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OLIN.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OLIN_1.70.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/OLIN.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.70.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.git_fetch_output.txt
.git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘marray’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘convert’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘locfit’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for ‘locfit’
ino: no visible global function definition for ‘predict’
lin: no visible global function definition for ‘locfit’
lin: no visible global function definition for ‘predict’
oin: no visible global function definition for ‘gcvplot’
oin: no visible global function definition for ‘locfit’
oin: no visible global function definition for ‘predict’
olin: no visible global function definition for ‘gcv’
olin: no visible global function definition for ‘locfit’
olin: no visible global function definition for ‘predict’
Undefined global functions or variables:
gcv gcvplot locfit predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
olin 21.416 0.303 21.738
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
‘/Users/biocbuild/bbs-3.13-bioc/meat/OLIN.Rcheck/00check.log’
for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
| name | user | system | elapsed | |
| anovaint | 0.211 | 0.022 | 0.233 | |
| anovapin | 0.109 | 0.014 | 0.123 | |
| anovaplate | 0.076 | 0.007 | 0.085 | |
| anovaspatial | 0.165 | 0.020 | 0.187 | |
| backgroundCorrect2 | 0.685 | 0.061 | 0.748 | |
| bas | 0.311 | 0.011 | 0.323 | |
| colorbar.mxy | 0.066 | 0.007 | 0.073 | |
| fdr.int | 0 | 0 | 0 | |
| fdr.int2 | 0.000 | 0.001 | 0.001 | |
| fdr.spatial | 0.000 | 0.001 | 0.001 | |
| fdr.spatial2 | 0 | 0 | 0 | |
| fgbg.visu | 0.115 | 0.013 | 0.128 | |
| ino | 0.380 | 0.036 | 0.418 | |
| lin | 0.837 | 0.065 | 0.902 | |
| m2v | 0.064 | 0.007 | 0.071 | |
| ma.matrix | 0.414 | 0.011 | 0.426 | |
| ma.vector | 0.592 | 0.042 | 0.635 | |
| mxy.abs.plot | 0.333 | 0.013 | 0.349 | |
| mxy.plot | 0.092 | 0.008 | 0.100 | |
| mxy2.plot | 0.075 | 0.007 | 0.083 | |
| oin | 1.154 | 0.045 | 1.201 | |
| olin | 21.416 | 0.303 | 21.738 | |
| p.int | 0.001 | 0.000 | 0.001 | |
| p.int2 | 0.001 | 0.000 | 0.000 | |
| p.spatial | 0.001 | 0.000 | 0.001 | |
| p.spatial2 | 0.000 | 0.000 | 0.001 | |
| sig.mask | 0.000 | 0.000 | 0.001 | |
| sigint.plot | 0.001 | 0.000 | 0.001 | |
| sigint.plot2 | 0.000 | 0.001 | 0.000 | |
| sigxy.plot | 0.000 | 0.001 | 0.001 | |
| sigxy.plot2 | 0 | 0 | 0 | |
| v2m | 0.075 | 0.007 | 0.090 | |