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This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for NormalyzerDE on tokay2

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raw results

Package 1278/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NormalyzerDE 1.10.0  (landing page)
Jakob Willforss
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/NormalyzerDE
git_branch: RELEASE_3_13
git_last_commit: 94eb4bc
git_last_commit_date: 2021-05-19 12:37:47 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NormalyzerDE
Version: 1.10.0
Command: rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.10.0.tar.gz
StartedAt: 2021-10-15 10:43:32 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 10:44:38 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 66.2 seconds
RetCode: 0
Status:   OK  
PackageFile: NormalyzerDE_1.10.0.zip
PackageFileSize: 1.481 MiB

Command output

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###
### Running command:
###
###   rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.10.0.tar.gz
###
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install for i386

* installing *source* package 'NormalyzerDE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NormalyzerDE'
    finding HTML links ... done
    NormalyzerDataset                       html  
    NormalyzerEvaluationResults             html  
    NormalyzerResults                       html  
    NormalyzerStatistics                    html  
    analyzeNormalizations                   html  
    calculateANOVAPValues                   html  
    calculateAvgMadMem                      html  
    calculateAvgReplicateVariation          html  
    calculateContrasts                      html  
    calculateCorrSum                        html  
    calculateFeatureCV                      html  
    calculatePercentageAvgDiffInMat         html  
    calculateReplicateCV                    html  
    calculateSummarizedCorrelationVector    html  
    createDirectory                         html  
    detectSingleReplicate                   html  
    detectSingletonSample                   html  
    elapsedSecondsBetweenSystimes           html  
    example_data                            html  
    example_data_only_values                html  
    example_design                          html  
    example_stat_data                       html  
    example_stat_summarized_experiment      html  
    example_summarized_experiment           html  
    example_wide_data                       html  
    example_wide_design                     html  
    filterLowRep                            html  
    findLowlyVariableFeaturesCVs            html  
    generateAnnotatedMatrix                 html  
    generatePlots                           html  
    generateStatsReport                     html  
    getCombinedMatrix                       html  
    getIndexList                            html  
    getLowCountSampleFiltered               html  
    getRTNormalizedMatrix                   html  
    getReplicateSortedData                  html  
    getRowNAFilterContrast                  html  
    getSmoothedRTNormalizedMatrix           html  
    getVerifiedNormalyzerObject             html  
    getWidenedRTRange                       html  
    globalIntensityNormalization            html  
    loadData                                html  
    loadDesign                              html  
    loadRawDataFromFile                     html  
    meanNormalization                       html  
    medianNormalization                     html  
    normMethods                             html  
    normalyzer                              html  
    normalyzerDE                            html  
    performCyclicLoessNormalization         html  
    performGlobalRLRNormalization           html  
    performNoNormalization                  html  
    performNormalizations                   html  
    performQuantileNormalization            html  
    performSMADNormalization                html  
    performVSNNormalization                 html  
    plotBoxPlot                             html  
    plotCVvsIntensity                       html  
    plotComparisonVenns                     html  
    plotContrastPCA                         html  
    plotContrastPHists                      html  
    plotCorrelation                         html  
    plotDendrograms                         html  
    plotDensity                             html  
    plotFrontPage                           html  
    plotMA                                  html  
    plotMDS                                 html  
    plotMeanSD                              html  
    plotPHist                               html  
    plotQQ                                  html  
    plotRLE                                 html  
    plotReplicateVarAndStableVariables      html  
    plotReplicateVariance                   html  
    plotSampleMappingPage                   html  
    plotSampleOutlierSummary                html  
    plotScatter                             html  
    plotSigScatter                          html  
    preprocessData                          html  
    printMeta                               html  
    printPlots                              html  
    reduceTechnicalReplicates               html  
    setupJobDir                             html  
    setupPlotting                           html  
    setupRawContrastObject                  html  
    setupRawDataObject                      html  
    setupTestData                           html  
    validateSampleReplication               html  
    verifyContrasts                         html  
    verifyDesignMatrix                      html  
    verifyMultipleSamplesPresent            html  
    verifySummarizedExperiment              html  
    verifyValidNumbers                      html  
    writeNormalizedDatasets                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NormalyzerDE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NormalyzerDE' as NormalyzerDE_1.10.0.zip
* DONE (NormalyzerDE)