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This page was generated on 2021-10-15 15:06:10 -0400 (Fri, 15 Oct 2021).

INSTALL results for LymphoSeq on tokay2

To the developers/maintainers of the LymphoSeq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LymphoSeq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1009/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LymphoSeq 1.20.0  (landing page)
David Coffey
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/LymphoSeq
git_branch: RELEASE_3_13
git_last_commit: 672762d
git_last_commit_date: 2021-05-19 12:19:57 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: LymphoSeq
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/LymphoSeq_1.20.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.20.0.zip && rm LymphoSeq_1.20.0.tar.gz LymphoSeq_1.20.0.zip
StartedAt: 2021-10-14 09:37:15 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 09:38:20 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/LymphoSeq_1.20.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.20.0.zip && rm LymphoSeq_1.20.0.tar.gz LymphoSeq_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  710k  100  710k    0     0  1884k      0 --:--:-- --:--:-- --:--:-- 1890k

install for i386

* installing *source* package 'LymphoSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LymphoSeq'
    finding HTML links ... done
    alignSeq                                html  
    bhattacharyyaCoefficient                html  
    bhattacharyyaMatrix                     html  
    chordDiagramVDJ                         html  
    clonalRelatedness                       html  
    clonality                               html  
    cloneTrack                              html  
    commonSeqs                              html  
    commonSeqsBar                           html  
    commonSeqsPlot                          html  
    commonSeqsVenn                          html  
    differentialAbundance                   html  
    exportFasta                             html  
    geneFreq                                html  
    lorenzCurve                             html  
    mergeFiles                              html  
    pairwisePlot                            html  
    phyloTree                               html  
    productive                              html  
    productiveSeq                           html  
    readImmunoSeq                           html  
    removeSeq                               html  
    searchPublished                         html  
    searchSeq                               html  
    seqMatrix                               html  
    similarityMatrix                        html  
    similarityScore                         html  
    topFreq                                 html  
    topSeqs                                 html  
    topSeqsPlot                             html  
    uniqueSeqs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LymphoSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LymphoSeq' as LymphoSeq_1.20.0.zip
* DONE (LymphoSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'LymphoSeq' successfully unpacked and MD5 sums checked