Thomas Carroll
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Herper |
| git_branch: RELEASE_3_13 |
| git_last_commit: 98047e8 |
| git_last_commit_date: 2021-05-19 12:56:53 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Herper package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Herper.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 852/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Herper 1.2.0 (landing page) Thomas Carroll
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | TIMEOUT | skipped | skipped | |||||||||
| Package: Herper |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Herper_1.2.0.tar.gz |
| StartedAt: 2021-10-15 00:20:30 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 00:58:17 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 2267.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Herper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Herper.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Herper_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/Herper.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Herper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Herper' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Herper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ListCondaEnvironments 0.32 0.52 210.76
UseEnvironments 0.01 0.36 128.01
install_CondaSysReqs 0.07 0.25 18.10
ListCondaPackages 0.04 0.08 5.52
SaveEnvironments 0.00 0.07 11.06
install_CondaTools 0.00 0.00 6.36
search_conda 0.00 0.00 6.05
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ListCondaEnvironments 0.30 0.45 341.89
UseEnvironments 0.07 0.34 267.50
install_CondaSysReqs 0.08 0.26 25.50
ListCondaPackages 0.00 0.12 10.09
SaveEnvironments 0.00 0.04 13.14
install_CondaTools 0.00 0.02 10.64
search_conda 0.00 0.02 10.53
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Herper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Herper_1.2.0.tar.gz && rm -rf Herper.buildbin-libdir && mkdir Herper.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Herper.buildbin-libdir Herper_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Herper_1.2.0.zip && rm Herper_1.2.0.tar.gz Herper_1.2.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
54 589k 54 324k 0 0 1231k 0 --:--:-- --:--:-- --:--:-- 1232k
100 589k 100 589k 0 0 2200k 0 --:--:-- --:--:-- --:--:-- 2201k
install for i386
* installing *source* package 'Herper' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Herper'
finding HTML links ... done
ListCondaEnvironments html
ListCondaPackages html
SaveEnvironments html
UseEnvironments html
conda_create_silentJSON html
conda_install_silentJSON html
install_CondaSysReqs html
install_CondaTools html
search_conda html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Herper' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Herper' as Herper_1.2.0.zip
* DONE (Herper)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Herper' successfully unpacked and MD5 sums checked
|
Herper.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Herper)
Loading required package: reticulate
>
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86.exe'
Content type 'application/octet-stream' length 57981080 bytes (55.3 MB)
==================================================
downloaded 55.3 MB
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.13-\tmpdir\RTMP82~1\Test
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.9.30 | h9f7ea03_1 116 KB
certifi-2021.10.8 | py39h9f7ea03_0 152 KB
charset-normalizer-2.0.4 | pyhd3eb1b0_0 35 KB
idna-3.2 | pyhd3eb1b0_0 48 KB
openssl-1.1.1l | hc431981_0 4.4 MB
pip-21.2.4 | py39h9f7ea03_0 1.8 MB
requests-2.26.0 | pyhd3eb1b0_0 59 KB
setuptools-58.0.4 | py39h9f7ea03_0 792 KB
tqdm-4.62.2 | pyhd3eb1b0_1 96 KB
tzdata-2021a | h5d7bf9c_0 111 KB
urllib3-1.26.7 | pyhd3eb1b0_0 111 KB
wheel-0.37.0 | pyhd3eb1b0_1 33 KB
wincertstore-0.2 | py39h9f7ea03_2 15 KB
------------------------------------------------------------
Total: 7.7 MB
The following NEW packages will be INSTALLED:
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
The following packages will be REMOVED:
chardet-4.0.0-py39h9f7ea03_1003
The following packages will be UPDATED:
ca-certificates 2021.7.5-h9f7ea03_1 --> 2021.9.30-h9f7ea03_1
certifi 2021.5.30-py39h9f7ea03_0 --> 2021.10.8-py39h9f7ea03_0
idna 2.10-pyhd3eb1b0_0 --> 3.2-pyhd3eb1b0_0
openssl 1.1.1k-hc431981_0 --> 1.1.1l-hc431981_0
pip 21.1.3-py39h9f7ea03_0 --> 21.2.4-py39h9f7ea03_0
requests 2.25.1-pyhd3eb1b0_0 --> 2.26.0-pyhd3eb1b0_0
setuptools 52.0.0-py39h9f7ea03_0 --> 58.0.4-py39h9f7ea03_0
tqdm 4.61.2-pyhd3eb1b0_1 --> 4.62.2-pyhd3eb1b0_1
urllib3 1.26.6-pyhd3eb1b0_1 --> 1.26.7-pyhd3eb1b0_0
wheel 0.36.2-pyhd3eb1b0_0 --> 0.37.0-pyhd3eb1b0_1
wincertstore 0.2-py39hc431981_0 --> 0.2-py39h9f7ea03_2
The following packages will be DOWNGRADED:
tzdata 2021a-h52ac0ba_0 --> 2021a-h5d7bf9c_0
Downloading and Extracting Packages
idna-3.2 | 48 KB | | 0%
idna-3.2 | 48 KB | ###3 | 33%
idna-3.2 | 48 KB | ########## | 100%
idna-3.2 | 48 KB | ########## | 100%
urllib3-1.26.7 | 111 KB | | 0%
urllib3-1.26.7 | 111 KB | ########## | 100%
urllib3-1.26.7 | 111 KB | ########## | 100%
wheel-0.37.0 | 33 KB | | 0%
wheel-0.37.0 | 33 KB | ########## | 100%
wheel-0.37.0 | 33 KB | ########## | 100%
tzdata-2021a | 111 KB | | 0%
tzdata-2021a | 111 KB | ########## | 100%
tzdata-2021a | 111 KB | ########## | 100%
requests-2.26.0 | 59 KB | | 0%
requests-2.26.0 | 59 KB | ########## | 100%
requests-2.26.0 | 59 KB | ########## | 100%
tqdm-4.62.2 | 96 KB | | 0%
tqdm-4.62.2 | 96 KB | ########## | 100%
tqdm-4.62.2 | 96 KB | ########## | 100%
pip-21.2.4 | 1.8 MB | | 0%
pip-21.2.4 | 1.8 MB | #1 | 11%
pip-21.2.4 | 1.8 MB | ########## | 100%
pip-21.2.4 | 1.8 MB | ########## | 100%
charset-normalizer-2 | 35 KB | | 0%
charset-normalizer-2 | 35 KB | ########## | 100%
charset-normalizer-2 | 35 KB | ########## | 100%
ca-certificates-2021 | 116 KB | | 0%
ca-certificates-2021 | 116 KB | ########## | 100%
ca-certificates-2021 | 116 KB | ########## | 100%
openssl-1.1.1l | 4.4 MB | | 0%
openssl-1.1.1l | 4.4 MB | #7 | 18%
openssl-1.1.1l | 4.4 MB | ########## | 100%
openssl-1.1.1l | 4.4 MB | ########## | 100%
certifi-2021.10.8 | 152 KB | | 0%
certifi-2021.10.8 | 152 KB | ########## | 100%
certifi-2021.10.8 | 152 KB | ########## | 100%
setuptools-58.0.4 | 792 KB | | 0%
setuptools-58.0.4 | 792 KB | ######4 | 65%
setuptools-58.0.4 | 792 KB | ########## | 100%
wincertstore-0.2 | 15 KB | | 0%
wincertstore-0.2 | 15 KB | ########## | 100%
wincertstore-0.2 | 15 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.13-\tmpdir\RTMP82~1\Test\envs\r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
blas-1.0 | mkl 6 KB
certifi-2018.4.16 | py36_0 143 KB conda-forge
intel-openmp-2021.3.0 | h9f7ea03_3372 1.2 MB
mkl-2020.2 | 256 56.5 MB
mkl-service-2.3.0 | py36hdb075cb_0 40 KB
mkl_fft-1.0.9 | py36_0 112 KB conda-forge
mkl_random-1.0.1 | py36_0 216 KB conda-forge
numpy-1.19.2 | py36h0f2e2a7_0 22 KB
numpy-base-1.19.2 | py36hfe54e71_0 3.6 MB
pip-21.3 | pyhd8ed1ab_0 1.2 MB conda-forge
python-3.6.5 | 1 18.1 MB conda-forge
setuptools-39.0.1 | py36_0 572 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
wheel-0.37.0 | pyhd8ed1ab_1 31 KB conda-forge
wincertstore-0.2 | py36_0 11 KB conda-forge
------------------------------------------------------------
Total: 81.7 MB
The following NEW packages will be INSTALLED:
blas pkgs/main/win-32::blas-1.0-mkl
certifi conda-forge/win-32::certifi-2018.4.16-py36_0
intel-openmp pkgs/main/win-32::intel-openmp-2021.3.0-h9f7ea03_3372
mkl pkgs/main/win-32::mkl-2020.2-256
mkl-service pkgs/main/win-32::mkl-service-2.3.0-py36hdb075cb_0
mkl_fft conda-forge/win-32::mkl_fft-1.0.9-py36_0
mkl_random conda-forge/win-32::mkl_random-1.0.1-py36_0
numpy pkgs/main/win-32::numpy-1.19.2-py36h0f2e2a7_0
numpy-base pkgs/main/win-32::numpy-base-1.19.2-py36hfe54e71_0
pip conda-forge/noarch::pip-21.3-pyhd8ed1ab_0
python conda-forge/win-32::python-3.6.5-1
setuptools conda-forge/win-32::setuptools-39.0.1-py36_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
vc pkgs/main/win-32::vc-14.2-h21ff451_1
vs2015_runtime pkgs/main/win-32::vs2015_runtime-14.27.29016-h5e58377_2
wheel conda-forge/noarch::wheel-0.37.0-pyhd8ed1ab_1
wincertstore conda-forge/win-32::wincertstore-0.2-py36_0
Downloading and Extracting Packages
mkl-service-2.3.0 | 40 KB | | 0%
mkl-service-2.3.0 | 40 KB | ###9 | 40%
mkl-service-2.3.0 | 40 KB | ########## | 100%
mkl-service-2.3.0 | 40 KB | ########## | 100%
wheel-0.37.0 | 31 KB | | 0%
wheel-0.37.0 | 31 KB | #####1 | 52%
wheel-0.37.0 | 31 KB | ########## | 100%
certifi-2018.4.16 | 143 KB | | 0%
certifi-2018.4.16 | 143 KB | ####4 | 45%
certifi-2018.4.16 | 143 KB | ########## | 100%
certifi-2018.4.16 | 143 KB | ########## | 100%
six-1.16.0 | 14 KB | | 0%
six-1.16.0 | 14 KB | ########## | 100%
six-1.16.0 | 14 KB | ########## | 100%
numpy-1.19.2 | 22 KB | | 0%
numpy-1.19.2 | 22 KB | ########## | 100%
numpy-1.19.2 | 22 KB | ########## | 100%
mkl_random-1.0.1 | 216 KB | | 0%
mkl_random-1.0.1 | 216 KB | ##9 | 30%
mkl_random-1.0.1 | 216 KB | ########## | 100%
mkl_random-1.0.1 | 216 KB | ########## | 100%
setuptools-39.0.1 | 572 KB | | 0%
setuptools-39.0.1 | 572 KB | ####7 | 48%
setuptools-39.0.1 | 572 KB | ########## | 100%
setuptools-39.0.1 | 572 KB | ########## | 100%
mkl-2020.2 | 56.5 MB | | 0%
mkl-2020.2 | 56.5 MB | | 0%
mkl-2020.2 | 56.5 MB | 1 | 1%
mkl-2020.2 | 56.5 MB | 3 | 4%
mkl-2020.2 | 56.5 MB | 9 | 10%
mkl-2020.2 | 56.5 MB | #9 | 20%
mkl-2020.2 | 56.5 MB | ##4 | 25%
mkl-2020.2 | 56.5 MB | ###2 | 33%
mkl-2020.2 | 56.5 MB | ###9 | 39%
mkl-2020.2 | 56.5 MB | ####7 | 48%
mkl-2020.2 | 56.5 MB | #####5 | 56%
mkl-2020.2 | 56.5 MB | ######2 | 62%
mkl-2020.2 | 56.5 MB | ######8 | 69%
mkl-2020.2 | 56.5 MB | #######4 | 75%
mkl-2020.2 | 56.5 MB | ######## | 81%
mkl-2020.2 | 56.5 MB | ########6 | 87%
mkl-2020.2 | 56.5 MB | #########2 | 92%
mkl-2020.2 | 56.5 MB | #########7 | 97%
mkl-2020.2 | 56.5 MB | ########## | 100%
intel-openmp-2021.3. | 1.2 MB | | 0%
intel-openmp-2021.3. | 1.2 MB | ##4 | 24%
intel-openmp-2021.3. | 1.2 MB | ########## | 100%
intel-openmp-2021.3. | 1.2 MB | ########## | 100%
mkl_fft-1.0.9 | 112 KB | | 0%
mkl_fft-1.0.9 | 112 KB | ########## | 100%
mkl_fft-1.0.9 | 112 KB | ########## | 100%
blas-1.0 | 6 KB | | 0%
blas-1.0 | 6 KB | ########## | 100%
blas-1.0 | 6 KB | ########## | 100%
python-3.6.5 | 18.1 MB | | 0%
python-3.6.5 | 18.1 MB | 1 | 1%
python-3.6.5 | 18.1 MB | 8 | 9%
python-3.6.5 | 18.1 MB | ###7 | 37%
python-3.6.5 | 18.1 MB | #####1 | 52%
python-3.6.5 | 18.1 MB | ######4 | 64%
python-3.6.5 | 18.1 MB | #######5 | 76%
python-3.6.5 | 18.1 MB | #########9 | 100%
python-3.6.5 | 18.1 MB | ########## | 100%
wincertstore-0.2 | 11 KB | | 0%
wincertstore-0.2 | 11 KB | ########## | 100%
wincertstore-0.2 | 11 KB | ########## | 100%
numpy-base-1.19.2 | 3.6 MB | | 0%
numpy-base-1.19.2 | 3.6 MB | # | 10%
numpy-base-1.19.2 | 3.6 MB | ######1 | 62%
numpy-base-1.19.2 | 3.6 MB | ########## | 100%
numpy-base-1.19.2 | 3.6 MB | ########## | 100%
pip-21.3 | 1.2 MB | | 0%
pip-21.3 | 1.2 MB | ####6 | 47%
pip-21.3 | 1.2 MB | ########## | 100%
pip-21.3 | 1.2 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 3 ]
>
> proc.time()
user system elapsed
2.75 1.71 451.54
|
Herper.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Herper)
Loading required package: reticulate
>
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Windows-x86_64.exe'
Content type 'application/octet-stream' length 60924672 bytes (58.1 MB)
==================================================
downloaded 58.1 MB
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.13-\tmpdir\RTMPKD~1\Test
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.9.30 | haa95532_1 116 KB
certifi-2021.10.8 | py39haa95532_0 152 KB
charset-normalizer-2.0.4 | pyhd3eb1b0_0 35 KB
cryptography-3.4.8 | py39h71e12ea_0 638 KB
idna-3.2 | pyhd3eb1b0_0 48 KB
openssl-1.1.1l | h2bbff1b_0 4.8 MB
pip-21.2.4 | py39haa95532_0 1.8 MB
pywin32-228 | py39hbaba5e8_1 5.6 MB
requests-2.26.0 | pyhd3eb1b0_0 59 KB
setuptools-58.0.4 | py39haa95532_0 778 KB
tqdm-4.62.2 | pyhd3eb1b0_1 96 KB
tzdata-2021a | h5d7bf9c_0 111 KB
urllib3-1.26.7 | pyhd3eb1b0_0 111 KB
wheel-0.37.0 | pyhd3eb1b0_1 33 KB
wincertstore-0.2 | py39haa95532_2 15 KB
------------------------------------------------------------
Total: 14.4 MB
The following NEW packages will be INSTALLED:
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
The following packages will be REMOVED:
chardet-4.0.0-py39haa95532_1003
The following packages will be UPDATED:
ca-certificates 2021.7.5-haa95532_1 --> 2021.9.30-haa95532_1
certifi 2021.5.30-py39haa95532_0 --> 2021.10.8-py39haa95532_0
cryptography 3.4.7-py39h71e12ea_0 --> 3.4.8-py39h71e12ea_0
idna 2.10-pyhd3eb1b0_0 --> 3.2-pyhd3eb1b0_0
openssl 1.1.1k-h2bbff1b_0 --> 1.1.1l-h2bbff1b_0
pip 21.1.3-py39haa95532_0 --> 21.2.4-py39haa95532_0
pywin32 228-py39he774522_0 --> 228-py39hbaba5e8_1
requests 2.25.1-pyhd3eb1b0_0 --> 2.26.0-pyhd3eb1b0_0
setuptools 52.0.0-py39haa95532_0 --> 58.0.4-py39haa95532_0
tqdm 4.61.2-pyhd3eb1b0_1 --> 4.62.2-pyhd3eb1b0_1
urllib3 1.26.6-pyhd3eb1b0_1 --> 1.26.7-pyhd3eb1b0_0
wheel 0.36.2-pyhd3eb1b0_0 --> 0.37.0-pyhd3eb1b0_1
wincertstore 0.2-py39h2bbff1b_0 --> 0.2-py39haa95532_2
The following packages will be DOWNGRADED:
tzdata 2021a-h52ac0ba_0 --> 2021a-h5d7bf9c_0
Downloading and Extracting Packages
wincertstore-0.2 | 15 KB | | 0%
wincertstore-0.2 | 15 KB | ########## | 100%
wincertstore-0.2 | 15 KB | ########## | 100%
requests-2.26.0 | 59 KB | | 0%
requests-2.26.0 | 59 KB | ########## | 100%
requests-2.26.0 | 59 KB | ########## | 100%
certifi-2021.10.8 | 152 KB | | 0%
certifi-2021.10.8 | 152 KB | ########4 | 84%
certifi-2021.10.8 | 152 KB | ########## | 100%
cryptography-3.4.8 | 638 KB | | 0%
cryptography-3.4.8 | 638 KB | ###5 | 35%
cryptography-3.4.8 | 638 KB | ########## | 100%
cryptography-3.4.8 | 638 KB | ########## | 100%
idna-3.2 | 48 KB | | 0%
idna-3.2 | 48 KB | ########## | 100%
idna-3.2 | 48 KB | ########## | 100%
openssl-1.1.1l | 4.8 MB | | 0%
openssl-1.1.1l | 4.8 MB | #1 | 11%
openssl-1.1.1l | 4.8 MB | ##### | 50%
openssl-1.1.1l | 4.8 MB | ########## | 100%
openssl-1.1.1l | 4.8 MB | ########## | 100%
tzdata-2021a | 111 KB | | 0%
tzdata-2021a | 111 KB | ########## | 100%
tzdata-2021a | 111 KB | ########## | 100%
charset-normalizer-2 | 35 KB | | 0%
charset-normalizer-2 | 35 KB | ########## | 100%
charset-normalizer-2 | 35 KB | ########## | 100%
urllib3-1.26.7 | 111 KB | | 0%
urllib3-1.26.7 | 111 KB | ########## | 100%
urllib3-1.26.7 | 111 KB | ########## | 100%
wheel-0.37.0 | 33 KB | | 0%
wheel-0.37.0 | 33 KB | ########## | 100%
wheel-0.37.0 | 33 KB | ########## | 100%
pip-21.2.4 | 1.8 MB | | 0%
pip-21.2.4 | 1.8 MB | ##4 | 25%
pip-21.2.4 | 1.8 MB | ########## | 100%
pip-21.2.4 | 1.8 MB | ########## | 100%
tqdm-4.62.2 | 96 KB | | 0%
tqdm-4.62.2 | 96 KB | ########## | 100%
tqdm-4.62.2 | 96 KB | ########## | 100%
setuptools-58.0.4 | 778 KB | | 0%
setuptools-58.0.4 | 778 KB | ########## | 100%
setuptools-58.0.4 | 778 KB | ########## | 100%
ca-certificates-2021 | 116 KB | | 0%
ca-certificates-2021 | 116 KB | ########## | 100%
pywin32-228 | 5.6 MB | | 0%
pywin32-228 | 5.6 MB | 8 | 8%
pywin32-228 | 5.6 MB | ######6 | 67%
pywin32-228 | 5.6 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\BIOCBU~1\BBS-3~1.13-\tmpdir\RTMPKD~1\Test\envs\r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
certifi-2020.12.5 | py36haa95532_0 140 KB
intel-openmp-2021.4.0 | h57928b3_3556 3.2 MB conda-forge
libblas-3.9.0 | 11_win64_mkl 4.5 MB conda-forge
libcblas-3.9.0 | 11_win64_mkl 4.5 MB conda-forge
liblapack-3.9.0 | 11_win64_mkl 4.5 MB conda-forge
mkl-2021.3.0 | hb70f87d_564 179.7 MB conda-forge
numpy-1.19.5 | py36h4b40d73_2 4.9 MB conda-forge
pip-21.3 | pyhd8ed1ab_0 1.2 MB conda-forge
python-3.6.13 |h39d44d4_2_cpython 18.9 MB conda-forge
python_abi-3.6 | 2_cp36m 4 KB conda-forge
setuptools-49.6.0 | py36ha15d459_3 921 KB conda-forge
tbb-2021.3.0 | h2d74725_0 143 KB conda-forge
ucrt-10.0.20348.0 | h57928b3_0 1.2 MB conda-forge
vc-14.2 | hb210afc_5 13 KB conda-forge
vs2015_runtime-14.29.30037 | h902a5da_5 1.3 MB conda-forge
wheel-0.37.0 | pyhd8ed1ab_1 31 KB conda-forge
wincertstore-0.2 |py36ha15d459_1006 15 KB conda-forge
------------------------------------------------------------
Total: 225.0 MB
The following NEW packages will be INSTALLED:
certifi pkgs/main/win-64::certifi-2020.12.5-py36haa95532_0
intel-openmp conda-forge/win-64::intel-openmp-2021.4.0-h57928b3_3556
libblas conda-forge/win-64::libblas-3.9.0-11_win64_mkl
libcblas conda-forge/win-64::libcblas-3.9.0-11_win64_mkl
liblapack conda-forge/win-64::liblapack-3.9.0-11_win64_mkl
mkl conda-forge/win-64::mkl-2021.3.0-hb70f87d_564
numpy conda-forge/win-64::numpy-1.19.5-py36h4b40d73_2
pip conda-forge/noarch::pip-21.3-pyhd8ed1ab_0
python conda-forge/win-64::python-3.6.13-h39d44d4_2_cpython
python_abi conda-forge/win-64::python_abi-3.6-2_cp36m
setuptools conda-forge/win-64::setuptools-49.6.0-py36ha15d459_3
tbb conda-forge/win-64::tbb-2021.3.0-h2d74725_0
ucrt conda-forge/win-64::ucrt-10.0.20348.0-h57928b3_0
vc conda-forge/win-64::vc-14.2-hb210afc_5
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.29.30037-h902a5da_5
wheel conda-forge/noarch::wheel-0.37.0-pyhd8ed1ab_1
wincertstore conda-forge/win-64::wincertstore-0.2-py36ha15d459_1006
Downloading and Extracting Packages
ucrt-10.0.20348.0 | 1.2 MB | | 0%
ucrt-10.0.20348.0 | 1.2 MB | 1 | 1%
ucrt-10.0.20348.0 | 1.2 MB | #3 | 13%
ucrt-10.0.20348.0 | 1.2 MB | #######5 | 76%
ucrt-10.0.20348.0 | 1.2 MB | ########## | 100%
libblas-3.9.0 | 4.5 MB | | 0%
libblas-3.9.0 | 4.5 MB | 5 | 6%
libblas-3.9.0 | 4.5 MB | #####7 | 58%
libblas-3.9.0 | 4.5 MB | ########## | 100%
libblas-3.9.0 | 4.5 MB | ########## | 100%
certifi-2020.12.5 | 140 KB | | 0%
certifi-2020.12.5 | 140 KB | #1 | 11%
certifi-2020.12.5 | 140 KB | ########## | 100%
certifi-2020.12.5 | 140 KB | ########## | 100%
vc-14.2 | 13 KB | | 0%
vc-14.2 | 13 KB | ########## | 100%
vc-14.2 | 13 KB | ########## | 100%
python-3.6.13 | 18.9 MB | | 0%
python-3.6.13 | 18.9 MB | 2 | 2%
python-3.6.13 | 18.9 MB | # | 11%
python-3.6.13 | 18.9 MB | ##1 | 22%
python-3.6.13 | 18.9 MB | ##9 | 29%
python-3.6.13 | 18.9 MB | ######7 | 67%
python-3.6.13 | 18.9 MB | ########## | 100%
python-3.6.13 | 18.9 MB | ########## | 100%
python_abi-3.6 | 4 KB | | 0%
python_abi-3.6 | 4 KB | ########## | 100%
python_abi-3.6 | 4 KB | ########## | 100%
libcblas-3.9.0 | 4.5 MB | | 0%
libcblas-3.9.0 | 4.5 MB | 5 | 6%
libcblas-3.9.0 | 4.5 MB | ####2 | 43%
libcblas-3.9.0 | 4.5 MB | ########## | 100%
libcblas-3.9.0 | 4.5 MB | ########## | 100%
mkl-2021.3.0 | 179.7 MB | | 0%
mkl-2021.3.0 | 179.7 MB | | 0%
mkl-2021.3.0 | 179.7 MB | 1 | 2%
mkl-2021.3.0 | 179.7 MB | 4 | 4%
mkl-2021.3.0 | 179.7 MB | 8 | 8%
mkl-2021.3.0 | 179.7 MB | #2 | 13%
mkl-2021.3.0 | 179.7 MB | #6 | 16%
mkl-2021.3.0 | 179.7 MB | ## | 21%
mkl-2021.3.0 | 179.7 MB | ##6 | 26%
mkl-2021.3.0 | 179.7 MB | ### | 30%
mkl-2021.3.0 | 179.7 MB | ###6 | 36%
mkl-2021.3.0 | 179.7 MB | #### | 41%
mkl-2021.3.0 | 179.7 MB | ####5 | 45%
mkl-2021.3.0 | 179.7 MB | ####9 | 49%
mkl-2021.3.0 | 179.7 MB | #####2 | 53%
mkl-2021.3.0 | 179.7 MB | #####6 | 57%
mkl-2021.3.0 | 179.7 MB | ######1 | 61%
mkl-2021.3.0 | 179.7 MB | ######5 | 65%
mkl-2021.3.0 | 179.7 MB | ######8 | 69%
mkl-2021.3.0 | 179.7 MB | #######3 | 73%
mkl-2021.3.0 | 179.7 MB | #######8 | 78%
mkl-2021.3.0 | 179.7 MB | ########4 | 84%
mkl-2021.3.0 | 179.7 MB | ########8 | 88%
mkl-2021.3.0 | 179.7 MB | #########2 | 93%
mkl-2021.3.0 | 179.7 MB | #########6 | 97%
mkl-2021.3.0 | 179.7 MB | ########## | 100%
setuptools-49.6.0 | 921 KB | | 0%
setuptools-49.6.0 | 921 KB | ##9 | 30%
setuptools-49.6.0 | 921 KB | ########## | 100%
setuptools-49.6.0 | 921 KB | ########## | 100%
pip-21.3 | 1.2 MB | | 0%
pip-21.3 | 1.2 MB | ##4 | 25%
pip-21.3 | 1.2 MB | ########## | 100%
pip-21.3 | 1.2 MB | ########## | 100%
wheel-0.37.0 | 31 KB | | 0%
wheel-0.37.0 | 31 KB | ########## | 100%
wheel-0.37.0 | 31 KB | ########## | 100%
intel-openmp-2021.4. | 3.2 MB | | 0%
intel-openmp-2021.4. | 3.2 MB | # | 11%
intel-openmp-2021.4. | 3.2 MB | ######### | 91%
intel-openmp-2021.4. | 3.2 MB | ########## | 100%
numpy-1.19.5 | 4.9 MB | | 0%
numpy-1.19.5 | 4.9 MB | 7 | 7%
numpy-1.19.5 | 4.9 MB | #####7 | 58%
numpy-1.19.5 | 4.9 MB | ########## | 100%
numpy-1.19.5 | 4.9 MB | ########## | 100%
tbb-2021.3.0 | 143 KB | | 0%
tbb-2021.3.0 | 143 KB | ########## | 100%
tbb-2021.3.0 | 143 KB | ########## | 100%
vs2015_runtime-14.29 | 1.3 MB | | 0%
vs2015_runtime-14.29 | 1.3 MB | #9 | 20%
vs2015_runtime-14.29 | 1.3 MB | ########## | 100%
vs2015_runtime-14.29 | 1.3 MB | ########## | 100%
wincertstore-0.2 | 15 KB | | 0%
wincertstore-0.2 | 15 KB | ########## | 100%
wincertstore-0.2 | 15 KB | ########## | 100%
liblapack-3.9.0 | 4.5 MB | | 0%
liblapack-3.9.0 | 4.5 MB | 6 | 6%
liblapack-3.9.0 | 4.5 MB | ####3 | 44%
liblapack-3.9.0 | 4.5 MB | ########## | 100%
liblapack-3.9.0 | 4.5 MB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 3 ]
>
> proc.time()
user system elapsed
2.34 2.26 538.53
|
|
Herper.Rcheck/examples_i386/Herper-Ex.timings
|
Herper.Rcheck/examples_x64/Herper-Ex.timings
|