Shian Su
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Glimma |
| git_branch: RELEASE_3_13 |
| git_last_commit: 56d8c66 |
| git_last_commit_date: 2021-05-19 12:19:39 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Glimma package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Glimma.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 774/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Glimma 2.2.0 (landing page) Shian Su
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Glimma |
| Version: 2.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Glimma_2.2.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Glimma_2.2.0.zip && rm Glimma_2.2.0.tar.gz Glimma_2.2.0.zip |
| StartedAt: 2021-10-14 09:22:49 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:23:56 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 66.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Glimma_2.2.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Glimma_2.2.0.zip && rm Glimma_2.2.0.tar.gz Glimma_2.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
9 6001k 9 578k 0 0 1232k 0 0:00:04 --:--:-- 0:00:04 1231k
50 6001k 50 3028k 0 0 2097k 0 0:00:02 0:00:01 0:00:01 2097k
100 6001k 100 6001k 0 0 2650k 0 0:00:02 0:00:02 --:--:-- 2652k
install for i386
* installing *source* package 'Glimma' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Glimma'
finding HTML links ... done
arraydata html
as.hexcol html
buildXYData html
extractGroups html
glBar html
glBar.default html
glMDPlot.DESeqDataSet html
glMDPlot.DESeqResults html
glMDPlot.DGEExact html
glMDPlot.DGELRT html
glMDPlot.MArrayLM html
glMDPlot html
glMDPlot.default html
glMDRmd html
glMDSPlot.DESeqDataSet html
glMDSPlot.DGEList html
glMDSPlot html
glMDSPlot.default html
glScatter html
glScatter.default html
glTable html
glXYPlot html
glimma html
glimmaMA.DESeqDataSet html
glimmaMA.DGEExact html
glimmaMA.DGELRT html
glimmaMA.MArrayLM html
glimmaMA html
finding level-2 HTML links ... done
glimmaMDS.DESeqDataSet html
glimmaMDS.DGEList html
glimmaMDS html
glimmaMDS.default html
glimmaVolcano.DESeqDataSet html
glimmaVolcano.DGEExact html
glimmaVolcano.DGELRT html
glimmaVolcano.MArrayLM html
glimmaVolcano html
glimmaXY html
glimmaXYWidget html
glimma_plot html
gllink html
gltablink html
is.hex html
lymphomaRNAseq html
makeJson html
makeJson.data.frame html
makeJson.jschart html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Glimma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Glimma' as Glimma_2.2.0.zip
* DONE (Glimma)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Glimma' successfully unpacked and MD5 sums checked