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This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).

INSTALL results for GeneRegionScan on tokay2

To the developers/maintainers of the GeneRegionScan package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneRegionScan.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 723/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneRegionScan 1.48.0  (landing page)
Lasse Folkersen
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GeneRegionScan
git_branch: RELEASE_3_13
git_last_commit: 8331f9a
git_last_commit_date: 2021-05-19 11:43:04 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeneRegionScan
Version: 1.48.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneRegionScan_1.48.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.48.0.zip && rm GeneRegionScan_1.48.0.tar.gz GeneRegionScan_1.48.0.zip
StartedAt: 2021-10-14 07:45:31 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:48:25 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 174.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneRegionScan_1.48.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.48.0.zip && rm GeneRegionScan_1.48.0.tar.gz GeneRegionScan_1.48.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 7396k    0  3835    0     0   8010      0  0:15:45 --:--:--  0:15:45  8006
  5 7396k    5  419k    0     0   284k      0  0:00:26  0:00:01  0:00:25  284k
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 51 7396k   51 3777k    0     0  1087k      0  0:00:06  0:00:03  0:00:03 1087k
 93 7396k   93 6887k    0     0  1540k      0  0:00:04  0:00:04 --:--:-- 1540k
100 7396k  100 7396k    0     0  1611k      0  0:00:04  0:00:04 --:--:-- 1798k

install for i386

* installing *source* package 'GeneRegionScan' ...
** using staged installation
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneRegionScan'
    finding HTML links ... done
    Nondocumented-objects                   html  
    ProbeLevelSet-class                     html  
    addSnpPdata                             html  
    checkForFileInPath                      html  
    doProbeLinear                           html  
    doProbeTTest                            html  
    exampleProbeLevelSet                    html  
    excludeDoubleMatchingProbes             html  
    exonStructure                           html  
    findProbePositions                      html  
    findSequenceInGenome                    html  
    geneRegionScan                          html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GeneRegionScan.buildbin-libdir/00LOCK-GeneRegionScan/00new/GeneRegionScan/help/GeneRegionScan.html
    genomic                                 html  
    getLocalMetaprobeIntensities            html  
    getLocalProbeIntensities                html  
    getMetaprobesetsFromRegionOfInterest    html  
    getProbeLevelAnnotationForExonArrays    html  
    getProbesetsFromMetaprobeset            html  
    getProbesetsFromRegionOfInterest        html  
    getSequence                             html  
    getServerProbeIntensities               html  
    mrna                                    html  
    plotCoexpression                        html  
    plotOnGene                              html  
    plotStatistics                          html  
    readGeneInput                           html  
    translateSampleNames                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.48.0.zip
* DONE (GeneRegionScan)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GeneRegionScan' successfully unpacked and MD5 sums checked