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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EnMCB.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EnMCB_1.4.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/EnMCB.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EnMCB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EnMCB' version '1.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnMCB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
metricMCB.cv            19.33   1.74   21.06
IdentifyMCB             17.34   2.11   19.45
ensemble_model           6.59   2.05    9.00
pre_process_methylation  6.25   1.34    7.60
fast_roc_calculation     7.40   0.04    7.46
ensemble_prediction      6.71   0.22    6.92
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
IdentifyMCB             16.00   0.72   16.72
metricMCB.cv            16.19   0.00   16.19
pre_process_methylation  7.03   0.23    7.27
ensemble_model           6.66   0.48    9.58
fast_roc_calculation     6.67   0.11    6.79
ensemble_prediction      6.11   0.27    6.37
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/EnMCB_1.4.1.tar.gz && rm -rf EnMCB.buildbin-libdir && mkdir EnMCB.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnMCB.buildbin-libdir EnMCB_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EnMCB_1.4.1.zip && rm EnMCB_1.4.1.tar.gz EnMCB_1.4.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  142k  100  142k    0     0   737k      0 --:--:-- --:--:-- --:--:--  737k

install for i386

* installing *source* package 'EnMCB' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EnMCB'
    finding HTML links ... done
    IdentifyMCB                             html  
    as.data.frame.ridgemat                  html  
    as.ridgemat                             html  
    create_demo                             html  
    demo_MCBinformation                     html  
    demo_data                               html  
    demo_survival_data                      html  
    draw_survival_curve                     html  
    ensemble_model                          html  
    ensemble_prediction                     html  
    fast_roc_calculation                    html  
    metricMCB                               html  
    metricMCB.cv                            html  
    multi_coxph                             html  
    pre_process_methylation                 html  
    predict.mcb.coxph.penal                 html  
    univ_coxph                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EnMCB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnMCB' as EnMCB_1.4.1.zip
* DONE (EnMCB)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'EnMCB' successfully unpacked and MD5 sums checked