Hao Wu
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/DSS |
| git_branch: RELEASE_3_13 |
| git_last_commit: 7189a27 |
| git_last_commit_date: 2021-05-19 11:52:43 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the DSS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DSS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 537/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DSS 2.40.0 (landing page) Hao Wu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: DSS |
| Version: 2.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DSS_2.40.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DSS_2.40.0.zip && rm DSS_2.40.0.tar.gz DSS_2.40.0.zip |
| StartedAt: 2021-10-14 10:35:03 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:36:20 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 77.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DSS_2.40.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DSS_2.40.0.zip && rm DSS_2.40.0.tar.gz DSS_2.40.0.zip
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install for i386
* installing *source* package 'DSS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compute_var_smooth.c -o compute_var_smooth.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c filter.c -o filter.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nitem.c -o nitem.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DSS.buildbin-libdir/00LOCK-DSS/00new/DSS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DSS'
finding HTML links ... done
DMLfit.multiFactor html
DMLtest html
DMLtest.multiFactor html
DSS-package html
DSS.DE html
RRBS html
SeqCountSet-class html
finding level-2 HTML links ... done
callDML html
callDMR html
design html
dispersion html
estDispersion html
estNormFactors html
makeBSseqData html
normalizationFactor html
seqData html
showOneDMR html
waldTest html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DSS' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compute_var_smooth.c -o compute_var_smooth.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c filter.c -o filter.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nitem.c -o nitem.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DSS.buildbin-libdir/DSS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DSS' as DSS_2.40.0.zip
* DONE (DSS)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'DSS' successfully unpacked and MD5 sums checked