VJ Carey
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/BiocOncoTK |
| git_branch: RELEASE_3_13 |
| git_last_commit: 5b4a389 |
| git_last_commit_date: 2021-06-28 15:44:05 -0400 (Mon, 28 Jun 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the BiocOncoTK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 166/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocOncoTK 1.12.1 (landing page) VJ Carey
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BiocOncoTK |
| Version: 1.12.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BiocOncoTK_1.12.1.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.12.1.zip && rm BiocOncoTK_1.12.1.tar.gz BiocOncoTK_1.12.1.zip |
| StartedAt: 2021-10-14 11:03:21 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:05:04 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 103.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BiocOncoTK_1.12.1.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.12.1.zip && rm BiocOncoTK_1.12.1.tar.gz BiocOncoTK_1.12.1.zip
###
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocOncoTK'
finding HTML links ... done
CCLE_DRUG_BROAD html
MSIsensor.10k html
TcgaMutCounts html
TcgaNIndWithAnyMut html
add_sym html
annotTabs html
bindMSI html
bipg_tests html
brcaMAE html
buildPancanSE html
cell_70138 html
clueDemos html
clueServiceNames html
darmGBMcls html
dingMSI html
featIDMapper html
fireMSI html
get_plates html
ggFeatDens html
ggFeatureSegs html
ggMutDens html
icd10_c html
k23sig html
kang_DNArepair html
loadPatel html
log10pl1 html
map_tcga_ncit html
mc3toGR html
molpo_3utr html
molpo_5utr html
molpo_CDS html
molpo_WGS html
multiviz html
oncoPrintISB html
pancan.clin.varnames html
pancan_BQ html
finding level-2 HTML links ... done
pancan_app html
pancan_clinicalTabVarnames html
pancan_longname html
pancan_sampTypeMap html
pancan_tabulate html
patient_to_tumor_code html
pertClasses html
pert_70138 html
query_clue html
reexports html
replaceRownames html
small_msi html
tumNorSet html
utils html
viz_msi_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocOncoTK' as BiocOncoTK_1.12.1.zip
* DONE (BiocOncoTK)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'BiocOncoTK' successfully unpacked and MD5 sums checked