H. Pagès
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/BSgenome |
| git_branch: RELEASE_3_13 |
| git_last_commit: 6643064 |
| git_last_commit_date: 2021-05-19 11:37:32 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the BSgenome package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 217/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BSgenome 1.60.0 (landing page) H. Pagès
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: BSgenome |
| Version: 1.60.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BSgenome_1.60.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.60.0.zip && rm BSgenome_1.60.0.tar.gz BSgenome_1.60.0.zip |
| StartedAt: 2021-10-14 10:12:33 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:14:08 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 94.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BSgenome_1.60.0.tar.gz && rm -rf BSgenome.buildbin-libdir && mkdir BSgenome.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BSgenome.buildbin-libdir BSgenome_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BSgenome_1.60.0.zip && rm BSgenome_1.60.0.tar.gz BSgenome_1.60.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
29 5490k 29 1641k 0 0 1915k 0 0:00:02 --:--:-- 0:00:02 1914k
87 5490k 87 4778k 0 0 2574k 0 0:00:02 0:00:01 0:00:01 2574k
100 5490k 100 5490k 0 0 2687k 0 0:00:02 0:00:02 --:--:-- 2688k
install for i386
* installing *source* package 'BSgenome' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BSgenome'
finding HTML links ... done
BSParams-class html
finding level-2 HTML links ... done
BSgenome-class html
BSgenome-utils html
BSgenomeForge html
BSgenomeViews-class html
SNPlocs-class html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/BSgenome.buildbin-libdir/00LOCK-BSgenome/00new/BSgenome/help/snplocs.html
XtraSNPlocs-class html
available.genomes html
bsapply html
export-methods html
getSeq-methods html
injectSNPs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BSgenome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BSgenome' as BSgenome_1.60.0.zip
* DONE (BSgenome)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'BSgenome' successfully unpacked and MD5 sums checked