| Back to Build/check report for BioC 3.12 experimental data |
|
This page was generated on 2021-05-06 14:10:16 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the yeastGSData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 393/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| yeastGSData 0.28.0 (landing page) R. Gentleman
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: yeastGSData |
| Version: 0.28.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings yeastGSData_0.28.0.tar.gz |
| StartedAt: 2021-05-06 12:57:41 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:59:21 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 100.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: yeastGSData.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings yeastGSData_0.28.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/yeastGSData.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastGSData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 65.2Mb
sub-directories of 1Mb or more:
extdata 64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
BayesFactorNGS.rda 46Kb 18Kb xz
BayesFactorPGS.rda 70Kb 32Kb xz
MIPSGS.rda 15Kb 9Kb xz
Mpact.rda 199Kb 136Kb bzip2
NEGGS.rda 600Kb 40Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/yeastGSData.Rcheck/00check.log’
for details.
yeastGSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL yeastGSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘yeastGSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yeastGSData)
yeastGSData.Rcheck/yeastGSData-Ex.timings
| name | user | system | elapsed | |
| BayesFactorNGS | 0.020 | 0.000 | 0.019 | |
| BayesFactorPGS | 0.004 | 0.000 | 0.007 | |
| BinaryGS | 0.004 | 0.000 | 0.002 | |
| MIPSGS | 0.012 | 0.000 | 0.014 | |
| Mpact | 0.048 | 0.000 | 0.049 | |
| MpactEvidenceCodes | 0.000 | 0.000 | 0.001 | |
| NEGGS | 3.560 | 0.108 | 3.670 | |
| POSPS | 0.004 | 0.000 | 0.002 | |
| PRS | 0.000 | 0.000 | 0.001 | |