| Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:14 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the seq2pathway.data package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 336/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| seq2pathway.data 1.22.0 (landing page) Xinan Holly Yang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: seq2pathway.data |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:seq2pathway.data.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings seq2pathway.data_1.22.0.tar.gz |
| StartedAt: 2021-05-06 12:44:42 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:45:09 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 26.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: seq2pathway.data.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:seq2pathway.data.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings seq2pathway.data_1.22.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/seq2pathway.data.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seq2pathway.data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seq2pathway.data’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seq2pathway.data’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 225.9Mb
sub-directories of 1Mb or more:
data 4.3Mb
extdata 221.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
File ‘data/datalist’ contains malformed line(s):
‘’ ‘’
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/seq2pathway.data.Rcheck/00check.log’
for details.
seq2pathway.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL seq2pathway.data ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘seq2pathway.data’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seq2pathway.data)
seq2pathway.data.Rcheck/seq2pathway.data-Ex.timings
| name | user | system | elapsed | |
| Des_BP_list | 0.052 | 0.000 | 0.052 | |
| Des_CC_list | 0.020 | 0.008 | 0.028 | |
| Des_MF_list | 0.044 | 0.012 | 0.054 | |
| GO_BP_list | 0.076 | 0.004 | 0.079 | |
| GO_CC_list | 0.100 | 0.064 | 0.164 | |
| GO_GENCODE_df_hg_v19 | 0.024 | 0.000 | 0.022 | |
| GO_GENCODE_df_hg_v20 | 0.016 | 0.000 | 0.019 | |
| GO_GENCODE_df_mm_vM1 | 0.012 | 0.000 | 0.015 | |
| GO_GENCODE_df_mm_vM3 | 0.016 | 0.000 | 0.016 | |
| GO_GENCODE_df_mm_vM4 | 0.008 | 0.000 | 0.009 | |
| GO_MF_list | 0.048 | 0.000 | 0.046 | |
| Msig_GENCODE_df_hg_v19 | 0.024 | 0.000 | 0.024 | |
| Msig_GENCODE_df_hg_v20 | 0.024 | 0.000 | 0.023 | |
| Msig_GENCODE_df_mm_vM1 | 0.016 | 0.000 | 0.017 | |
| Msig_GENCODE_df_mm_vM3 | 0.016 | 0.000 | 0.018 | |
| Msig_GENCODE_df_mm_vM4 | 0.008 | 0.004 | 0.010 | |
| gencode_coding | 0.280 | 0.000 | 0.281 | |