| Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:12 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the optimalFlowData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 261/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| optimalFlowData 1.2.0 (landing page) Hristo Inouzhe
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: optimalFlowData |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz |
| StartedAt: 2021-05-06 12:29:30 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:30:22 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 51.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: optimalFlowData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings optimalFlowData_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 101.0Mb
sub-directories of 1Mb or more:
data 100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.
optimalFlowData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL optimalFlowData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘optimalFlowData’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlowData)
optimalFlowData.Rcheck/optimalFlowData-Ex.timings
| name | user | system | elapsed | |
| Cytometry1 | 0.052 | 0.000 | 0.056 | |
| Cytometry10 | 0.044 | 0.000 | 0.045 | |
| Cytometry11 | 0.024 | 0.016 | 0.039 | |
| Cytometry12 | 0.036 | 0.004 | 0.041 | |
| Cytometry13 | 0.032 | 0.016 | 0.045 | |
| Cytometry14 | 0.048 | 0.012 | 0.062 | |
| Cytometry15 | 0.024 | 0.000 | 0.023 | |
| Cytometry16 | 0.024 | 0.000 | 0.023 | |
| Cytometry17 | 0.092 | 0.004 | 0.097 | |
| Cytometry18 | 0.056 | 0.020 | 0.079 | |
| Cytometry19 | 0.032 | 0.004 | 0.038 | |
| Cytometry2 | 0.064 | 0.008 | 0.073 | |
| Cytometry20 | 0.060 | 0.008 | 0.067 | |
| Cytometry21 | 0.076 | 0.000 | 0.078 | |
| Cytometry22 | 0.036 | 0.000 | 0.034 | |
| Cytometry23 | 0.028 | 0.000 | 0.031 | |
| Cytometry24 | 0.028 | 0.004 | 0.033 | |
| Cytometry25 | 0.032 | 0.000 | 0.031 | |
| Cytometry26 | 0.032 | 0.000 | 0.035 | |
| Cytometry27 | 0.104 | 0.008 | 0.114 | |
| Cytometry28 | 0.088 | 0.024 | 0.112 | |
| Cytometry29 | 0.100 | 0.000 | 0.097 | |
| Cytometry3 | 0.016 | 0.000 | 0.020 | |
| Cytometry30 | 0.076 | 0.000 | 0.076 | |
| Cytometry31 | 0.076 | 0.000 | 0.075 | |
| Cytometry32 | 0.088 | 0.000 | 0.088 | |
| Cytometry33 | 0.044 | 0.000 | 0.046 | |
| Cytometry34 | 0.132 | 0.004 | 0.137 | |
| Cytometry35 | 0.068 | 0.000 | 0.068 | |
| Cytometry36 | 0.02 | 0.00 | 0.02 | |
| Cytometry37 | 0.020 | 0.000 | 0.017 | |
| Cytometry38 | 0.016 | 0.000 | 0.018 | |
| Cytometry39 | 0.016 | 0.004 | 0.018 | |
| Cytometry4 | 0.02 | 0.00 | 0.02 | |
| Cytometry40 | 0.044 | 0.004 | 0.046 | |
| Cytometry5 | 0.020 | 0.000 | 0.021 | |
| Cytometry6 | 0.016 | 0.000 | 0.019 | |
| Cytometry7 | 0.016 | 0.000 | 0.018 | |
| Cytometry8 | 0.016 | 0.004 | 0.020 | |
| Cytometry9 | 0.036 | 0.000 | 0.033 | |
| buildDatabase | 0.640 | 0.024 | 0.665 | |
| cytometry.diagnosis | 0.000 | 0.000 | 0.002 | |
| noise.types | 0.004 | 0.000 | 0.001 | |