| Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:10 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the hgu2beta7 package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 175/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| hgu2beta7 1.30.0 (landing page) Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: hgu2beta7 |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:hgu2beta7.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings hgu2beta7_1.30.0.tar.gz |
| StartedAt: 2021-05-06 12:11:17 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:11:34 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 17.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: hgu2beta7.Rcheck |
| Warnings: 3 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:hgu2beta7.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings hgu2beta7_1.30.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.0Mb
sub-directories of 1Mb or more:
data 6.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hgu2beta7: no visible binding for global variable ‘hgu2beta7QC’
Undefined global functions or variables:
hgu2beta7QC
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: ‘annotate’
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details.
hgu2beta7.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL hgu2beta7 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘hgu2beta7’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hgu2beta7)
hgu2beta7.Rcheck/hgu2beta7-Ex.timings
| name | user | system | elapsed | |
| hgu2beta7ACCNUM | 0.084 | 0.004 | 0.092 | |
| hgu2beta7CHR | 0.036 | 0.004 | 0.041 | |
| hgu2beta7CHRLENGTHS | 0 | 0 | 0 | |
| hgu2beta7CHRLOC | 0.148 | 0.000 | 0.150 | |
| hgu2beta7ENZYME | 0.012 | 0.008 | 0.019 | |
| hgu2beta7ENZYME2PROBE | 0.000 | 0.000 | 0.002 | |
| hgu2beta7GENENAME | 0.028 | 0.008 | 0.033 | |
| hgu2beta7GO | 0.152 | 0.012 | 0.167 | |
| hgu2beta7GO2ALLPROBES | 0.168 | 0.004 | 0.169 | |
| hgu2beta7GO2PROBE | 0.032 | 0.000 | 0.032 | |
| hgu2beta7GRIF | 0.020 | 0.000 | 0.019 | |
| hgu2beta7LOCUSID | 0.016 | 0.004 | 0.021 | |
| hgu2beta7MAP | 0.068 | 0.000 | 0.069 | |
| hgu2beta7OMIM | 0.024 | 0.000 | 0.022 | |
| hgu2beta7ORGANISM | 0 | 0 | 0 | |
| hgu2beta7PATH | 0.14 | 0.00 | 0.14 | |
| hgu2beta7PATH2PROBE | 0.004 | 0.000 | 0.002 | |
| hgu2beta7PMID | 0.076 | 0.000 | 0.075 | |
| hgu2beta7PMID2PROBE | 0.208 | 0.004 | 0.211 | |
| hgu2beta7REFSEQ | 0.124 | 0.000 | 0.123 | |
| hgu2beta7SUMFUNC | 0.052 | 0.000 | 0.054 | |
| hgu2beta7SYMBOL | 0.036 | 0.000 | 0.033 | |
| hgu2beta7UNIGENE | 0.032 | 0.000 | 0.032 | |