| Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:08 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the gageData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 137/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| gageData 2.28.0 (landing page) Weijun Luo
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: gageData |
| Version: 2.28.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings gageData_2.28.0.tar.gz |
| StartedAt: 2021-05-06 12:04:34 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 12:05:20 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 45.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gageData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:gageData.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings gageData_2.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/gageData.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 10.8Mb
sub-directories of 1Mb or more:
data 10.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hnrnp.cnts 9.892 0.052 9.95
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.12-data-experiment/meat/gageData.Rcheck/00check.log’
for details.
gageData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL gageData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘gageData’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gageData)
gageData.Rcheck/gageData-Ex.timings
| name | user | system | elapsed | |
| bmp6 | 3.528 | 0.132 | 3.728 | |
| genesets | 2.752 | 0.036 | 2.803 | |
| gse16873.full | 1.460 | 0.040 | 1.503 | |
| hnrnp.cnts | 9.892 | 0.052 | 9.950 | |
| sc.gene | 0.024 | 0.000 | 0.027 | |