Thomas J. Hardcastle
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/segmentSeq |
| Branch: RELEASE_3_12 |
| Last Commit: 1c3ee51 |
| Last Changed Date: 2020-10-27 10:37:38 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:32 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the segmentSeq package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1668/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| segmentSeq 2.24.0 (landing page) Thomas J. Hardcastle
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: segmentSeq |
| Version: 2.24.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/segmentSeq_2.24.0.tar.gz && rm -rf segmentSeq.buildbin-libdir && mkdir segmentSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=segmentSeq.buildbin-libdir segmentSeq_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL segmentSeq_2.24.0.zip && rm segmentSeq_2.24.0.tar.gz segmentSeq_2.24.0.zip |
| StartedAt: 2021-05-05 17:53:46 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:55:22 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 96.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/segmentSeq_2.24.0.tar.gz && rm -rf segmentSeq.buildbin-libdir && mkdir segmentSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=segmentSeq.buildbin-libdir segmentSeq_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL segmentSeq_2.24.0.zip && rm segmentSeq_2.24.0.tar.gz segmentSeq_2.24.0.zip
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install for i386
* installing *source* package 'segmentSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'segmentSeq'
finding HTML links ... done
SL html
alignmentClass-class html
alignmentData-class html
alignmentMeth-class html
averageMethylationRegions html
finding level-2 HTML links ... done
classifySeg html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6f5Jxm/R.INSTALL16ac6d891a68/segmentSeq/man/classifySeg.Rd:45: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
findChunks html
getCounts html
getOverlaps html
givenExpression html
hSL html
heuristicSeg html
lociData-class html
lociLikelihoods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6f5Jxm/R.INSTALL16ac6d891a68/segmentSeq/man/lociLikelihoods.Rd:27: file link 'getLikelihoods.NB' in package 'baySeq' does not exist and so has been treated as a topic
mergeMethSegs html
methData-class html
normaliseNC html
plotGenome html
plotMeth html
plotMethDistribution html
processAD html
readMethods html
readMeths html
segClass-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6f5Jxm/R.INSTALL16ac6d891a68/segmentSeq/man/segClass-class.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segData-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6f5Jxm/R.INSTALL16ac6d891a68/segmentSeq/man/segData-class.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segMeth-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6f5Jxm/R.INSTALL16ac6d891a68/segmentSeq/man/segMeth-class.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
segmentSeq-package html
selectLoci html
summariseLoci html
thresholdFinder html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'segmentSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'segmentSeq' as segmentSeq_2.24.0.zip
* DONE (segmentSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'segmentSeq' successfully unpacked and MD5 sums checked