Sean K Maden
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/recountmethylation |
| Branch: RELEASE_3_12 |
| Last Commit: 8c2ff8d |
| Last Changed Date: 2020-10-27 12:00:30 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:10 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the recountmethylation package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1491/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| recountmethylation 1.0.0 (landing page) Sean K Maden
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: recountmethylation |
| Version: 1.0.0 |
| Command: chmod a+r recountmethylation -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data recountmethylation |
| StartedAt: 2021-05-05 23:03:58 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 23:04:32 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 34.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r recountmethylation -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data recountmethylation
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* checking for file 'recountmethylation/DESCRIPTION' ... OK
* preparing 'recountmethylation':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'recountmethylation_data_analyses.Rmd' using rmarkdown
Warning in eval(expr, envir, enclos) : NAs introduced by coercion
Warning in cor.test.default(mdf$predage, mdf$chron.age, method = "spearman") :
Cannot compute exact p-value with ties
pdfcrop.exe: MiKTeX encountered an internal error.
`geom_smooth()` using formula 'y ~ x'
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
Warning in regularize.values(x, y, ties, missing(ties), na.rm = na.rm) :
collapsing to unique 'x' values
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
pdfcrop.exe: MiKTeX encountered an internal error.
intraisland_main;intragenic_body
interisland_opensea;intergenic
interisland_opensea;intragenic_body
intraisland_main;intragenic_promoter-body
intraisland_main;intergenic
intraisland_other;intragenic_body
intraisland_other;intergenic
intraisland_other;intragenic_promoter
intraisland_main;intragenic_promoter
intraisland_other;intragenic_promoter-body
interisland_opensea;intragenic_promoter-body
interisland_opensea;intragenic_promoter
pdfcrop.exe: MiKTeX encountered an internal error.
Warning: LaTeX Warning: You have requested package `C:/Users/biocbuild/bbs-3.12-bioc/R/l
ibrary/BiocStyle/resources/tex/Bioconductor',
but the package provides `Bioconductor'.
Package geometry Warning: Over-specification in `h'-direction.
`width' (384.1122pt) is ignored.
Package Fancyhdr Warning: \fancyhead's `E' option without twoside option is use
less on input line 162.
--- finished re-building 'recountmethylation_data_analyses.Rmd'
--- re-building 'recountmethylation_users_guide.Rmd' using rmarkdown
Quitting from lines 74-86 (recountmethylation_users_guide.Rmd)
Error: processing vignette 'recountmethylation_users_guide.Rmd' failed with diagnostics:
error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
--- failed re-building 'recountmethylation_users_guide.Rmd'
SUMMARY: processing the following file failed:
'recountmethylation_users_guide.Rmd'
Error: Vignette re-building failed.
Execution halted