Sean Davis
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/methylumi |
| Branch: RELEASE_3_12 |
| Last Commit: 5fb0b60 |
| Last Changed Date: 2020-10-27 10:35:47 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:14 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the methylumi package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1083/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methylumi 2.36.0 (landing page) Sean Davis
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: methylumi |
| Version: 2.36.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/methylumi_2.36.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL methylumi_2.36.0.zip && rm methylumi_2.36.0.tar.gz methylumi_2.36.0.zip |
| StartedAt: 2021-05-05 18:55:35 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:57:21 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 106.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/methylumi_2.36.0.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL methylumi_2.36.0.zip && rm methylumi_2.36.0.tar.gz methylumi_2.36.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 5611k 100 5611k 0 0 19.3M 0 --:--:-- --:--:-- --:--:-- 19.4M
install for i386
* installing *source* package 'methylumi' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'methylumi'
finding HTML links ... done
CpGs html
MethyLumi-class html
finding level-2 HTML links ... done
MethyLumiM-class html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:41: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:41: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:53: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:54: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:55: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:56: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:57: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:58: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmps1Xq3p/R.INSTALL227ca9c38c3/methylumi/man/MethyLumiM-class.Rd:70: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
MethyLumiQC-class html
MethyLumiSet-class html
estimateM html
extractBarcodeAndPosition html
featureFilter html
generics html
getAssayDataNameSubstitutions html
methylData-class html
methylumIDAT html
methylumi-package html
methylumiGenerics html
methylumiR html
mldat html
normalizeMethyLumiSet html
plotSampleIntensities html
qcplot html
stripBeadExtras html
varFilter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.36.0.zip
* DONE (methylumi)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked