| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:12 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the metahdep package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1055/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.48.0 (landing page) John R. Stevens
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
| Package: metahdep |
| Version: 1.48.0 |
| Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.48.0.tar.gz |
| StartedAt: 2021-05-06 09:29:23 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:29:58 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 34.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: metahdep_1.48.0.zip |
| PackageFileSize: 573.4 KiB |
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### Running command:
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### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.48.0.tar.gz
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install for i386
* installing *source* package 'metahdep' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.12-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
#define CHAR(x) R_CHAR(x)
^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
~~~~~^~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metahdep'
finding HTML links ... done
ES.obj-class html
HGU.DifExp.list html
HGU.newnames html
HGU.prep.list html
getPLM.es html
gloss html
metahdep.FEMA html
metahdep.HBLM html
metahdep.REMA html
metahdep html
metahdep.format html
metahdep.other html
metaprep-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metahdep' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.12-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
#define CHAR(x) R_CHAR(x)
^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
~~~~~^~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/metahdep.buildbin-libdir/metahdep/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.48.0.zip
* DONE (metahdep)