Hani Habra
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/metabCombiner |
| Branch: RELEASE_3_12 |
| Last Commit: 6fde963 |
| Last Changed Date: 2020-12-07 15:42:37 -0400 (Mon, 07 Dec 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:11 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the metabCombiner package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1045/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metabCombiner 1.0.1 (landing page) Hani Habra
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: metabCombiner |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/metabCombiner_1.0.1.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.0.1.zip && rm metabCombiner_1.0.1.tar.gz metabCombiner_1.0.1.zip |
| StartedAt: 2021-05-05 18:34:17 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:35:52 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 95.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/metabCombiner_1.0.1.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.0.1.zip && rm metabCombiner_1.0.1.tar.gz metabCombiner_1.0.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 804k 100 804k 0 0 13.8M 0 --:--:-- --:--:-- --:--:-- 14.2M
install for i386
* installing *source* package 'metabCombiner' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o selectAnchors.o write2file.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metabCombiner'
finding HTML links ... done
adjustData html
calcScores html
combinedTable html
combinerCheck html
crossValFit html
detectFields html
evaluateParams html
filterAnchors html
filterRT html
findDuplicates html
fit_gam html
fit_loess html
formCombinedTable html
getAnchors html
getCoefficients html
getData html
getExtra html
getModel html
getSamples html
getStats html
identityAnchorSelection html
isCombinedTable html
isMetabCombiner html
isMetabData html
iterativeAnchorSelection html
labelRows html
metabCombiner-class html
metabCombiner html
metabData-class html
metabData html
mzGroup html
nonmatched html
objective html
plasma20 html
plasma30 html
plot_fit html
scorePairs html
selectAnchors html
write2file html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metabCombiner' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o selectAnchors.o write2file.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/metabCombiner.buildbin-libdir/metabCombiner/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabCombiner' as metabCombiner_1.0.1.zip
* DONE (metabCombiner)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'metabCombiner' successfully unpacked and MD5 sums checked