| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:57 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the discordant package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 485/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| discordant 1.14.0 (landing page) Charlotte Siska
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: discordant |
| Version: 1.14.0 |
| Command: rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.14.0.tar.gz |
| StartedAt: 2021-05-06 08:55:47 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:56:09 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 21.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: discordant_1.14.0.zip |
| PackageFileSize: 391.5 KiB |
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### Running command:
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### rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.14.0.tar.gz
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install for i386
* installing *source* package 'discordant' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/discordant.buildbin-libdir/00LOCK-discordant/00new/discordant/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'discordant'
finding HTML links ... done
TCGA_Breast_RNASeq html
TCGA_Breast_RNASeq_voom html
TCGA_Breast_miRNASeq html
TCGA_Breast_miRNASeq_voom html
TCGA_GBM_miRNA_microarray html
TCGA_GBM_transcript_microarray html
createVectors html
discordantRun html
fishersTrans html
split.MADOutlier html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'discordant' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/discordant.buildbin-libdir/discordant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'discordant' as discordant_1.14.0.zip
* DONE (discordant)