Philipp Angerer
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/destiny |
| Branch: RELEASE_3_12 |
| Last Commit: a7323c8 |
| Last Changed Date: 2020-10-27 11:06:55 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:27:19 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the destiny package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 467/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| destiny 3.4.0 (landing page) Philipp Angerer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: destiny |
| Version: 3.4.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data destiny |
| StartedAt: 2021-05-05 18:38:47 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:40:05 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 79.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
###
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* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DPT.ipynbmeta’ using nbconvert
Error: processing vignette 'DPT.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'DPT.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.341 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.341 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.342 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
--- failed re-building ‘DPT.ipynbmeta’
--- re-building ‘Diffusion-Map-recap.ipynbmeta’ using nbconvert
Error: processing vignette 'Diffusion-Map-recap.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Diffusion-Map-recap.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.338 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.338 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.339 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
--- failed re-building ‘Diffusion-Map-recap.ipynbmeta’
--- re-building ‘Diffusion-Maps.ipynbmeta’ using nbconvert
Error: processing vignette 'Diffusion-Maps.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Diffusion-Maps.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.361 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.361 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.362 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
--- failed re-building ‘Diffusion-Maps.ipynbmeta’
--- re-building ‘Gene-Relevance.ipynbmeta’ using nbconvert
Error: processing vignette 'Gene-Relevance.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Gene-Relevance.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.338 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.338 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.339 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
--- failed re-building ‘Gene-Relevance.ipynbmeta’
--- re-building ‘Global-Sigma.ipynbmeta’ using nbconvert
Error: processing vignette 'Global-Sigma.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Global-Sigma.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.341 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.341 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.342 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
--- failed re-building ‘Global-Sigma.ipynbmeta’
--- re-building ‘tidyverse.ipynbmeta’ using nbconvert
Error: processing vignette 'tidyverse.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'tidyverse.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.338 \setlist
[enumerate,1]{label=\textcircled{\scriptsize\arabic*}, itemjo...
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Missing number, treated as zero.
<to be read again>
\c@*
l.338 ...]{label=\textcircled{\scriptsize\arabic*}
, itemjoin=\quad}
! Undefined control sequence.
l.339 \setlist
[description,1]{style=standard}
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
! LaTeX Error: Environment enumerate* undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! LaTeX Error: Lonely \item--perhaps a missing list environment.
See the LaTeX manual or LaTeX Companion for explanation.
Type H
--- failed re-building ‘tidyverse.ipynbmeta’
SUMMARY: processing the following files failed:
‘DPT.ipynbmeta’ ‘Diffusion-Map-recap.ipynbmeta’
‘Diffusion-Maps.ipynbmeta’ ‘Gene-Relevance.ipynbmeta’
‘Global-Sigma.ipynbmeta’ ‘tidyverse.ipynbmeta’
Error: Vignette re-building failed.
Execution halted