| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:57 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the atSNP package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 100/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| atSNP 1.6.1 (landing page) Sunyoung Shin
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: atSNP |
| Version: 1.6.1 |
| Command: rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=atSNP.buildbin-libdir atSNP_1.6.1.tar.gz |
| StartedAt: 2021-05-06 08:28:23 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:30:02 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 99.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: atSNP_1.6.1.zip |
| PackageFileSize: 1.695 MiB |
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### Running command:
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### rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=atSNP.buildbin-libdir atSNP_1.6.1.tar.gz
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install for i386
* installing *source* package 'atSNP' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSample.cpp -o ImportanceSample.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MotifScore.cpp -o MotifScore.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o atSNP.dll tmp.def ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/atSNP.buildbin-libdir/00LOCK-atSNP/00new/atSNP/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'atSNP'
finding HTML links ... done
ComputeMotifScore html
ComputePValues html
GetIUPACSequence html
LoadFastaData html
LoadMotifLibrary html
LoadSNPData html
MatchSubsequence html
atSNP-package html
dtMotifMatch html
encode_motif html
encode_motifinfo html
jaspar_motif html
jaspar_motifinfo html
motif_library html
motif_match html
motif_scores html
plotMotifMatch html
prior html
snpInfo html
snp_tbl html
transition html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'atSNP' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSample.cpp -o ImportanceSample.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MotifScore.cpp -o MotifScore.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o atSNP.dll tmp.def ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/atSNP.buildbin-libdir/atSNP/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'atSNP' as atSNP_1.6.1.zip
* DONE (atSNP)