| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:29:25 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the TFBSTools package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1851/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFBSTools 1.28.0 (landing page) Ge Tan
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: TFBSTools |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL TFBSTools |
| StartedAt: 2021-05-05 17:07:03 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:07:56 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 52.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL TFBSTools
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘TFBSTools’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function ‘score’:
matrixAlignerDynamic.c:235:22: warning: ‘best_pntr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
~~~~~~~~~~~~^~~~~~~~
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c R_init_TFBSTools.c -o R_init_TFBSTools.o
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-TFBSTools/00new/TFBSTools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘seqLogo’ in package ‘TFBSTools’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)