| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:45 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the SELEX package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1670/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SELEX 1.22.0 (landing page) Harmen J. Bussemaker
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: SELEX |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.22.0.tar.gz |
| StartedAt: 2021-05-06 06:05:30 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 06:07:31 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 120.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.22.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/SELEX.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SELEX 28.616 3.196 10.714
selex.seqfilter 13.477 1.437 4.332
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.12-bioc/meat/SELEX.Rcheck/00check.log’
for details.
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 28.616 | 3.196 | 10.714 | |
| selex.affinities | 0.997 | 0.040 | 0.381 | |
| selex.config | 0.216 | 0.010 | 0.056 | |
| selex.countSummary | 1.329 | 0.067 | 0.487 | |
| selex.counts | 1.649 | 0.058 | 0.640 | |
| selex.defineSample | 0.108 | 0.012 | 0.062 | |
| selex.exampledata | 0.059 | 0.010 | 0.047 | |
| selex.fastqPSFM | 0.583 | 0.041 | 0.326 | |
| selex.getAttributes | 0.236 | 0.016 | 0.093 | |
| selex.getRound0 | 0.270 | 0.013 | 0.144 | |
| selex.getSeqfilter | 0.093 | 0.005 | 0.045 | |
| selex.infogain | 2.637 | 0.089 | 0.728 | |
| selex.infogainSummary | 1.326 | 0.058 | 0.394 | |
| selex.jvmStatus | 0.112 | 0.004 | 0.045 | |
| selex.kmax | 1.820 | 0.313 | 0.995 | |
| selex.kmerPSFM | 0.405 | 0.071 | 0.330 | |
| selex.loadAnnotation | 0.236 | 0.012 | 0.123 | |
| selex.mm | 0.601 | 0.030 | 0.306 | |
| selex.mmProb | 0.603 | 0.053 | 0.265 | |
| selex.mmSummary | 0.340 | 0.022 | 0.264 | |
| selex.revcomp | 0.690 | 0.052 | 0.464 | |
| selex.run | 1.892 | 0.056 | 0.655 | |
| selex.sample | 0.440 | 0.013 | 0.120 | |
| selex.samplePSFM | 1.100 | 0.034 | 0.335 | |
| selex.sampleSummary | 0.204 | 0.010 | 0.092 | |
| selex.saveAnnotation | 0.099 | 0.010 | 0.055 | |
| selex.seqfilter | 13.477 | 1.437 | 4.332 | |
| selex.setwd | 0.119 | 0.002 | 0.030 | |
| selex.split | 1.116 | 0.029 | 0.269 | |
| selex.summary | 2.333 | 0.103 | 0.768 | |