| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:05 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the PepsNMR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1325/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PepsNMR 1.8.1 (landing page) Manon Martin
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PepsNMR |
| Version: 1.8.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.8.1.tar.gz |
| StartedAt: 2021-05-06 04:36:34 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:48:00 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 685.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PepsNMR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PepsNMR_1.8.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/PepsNMR.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.8.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PEPSNMR-package 281.265 11.622 293.331
PreprocessingChain 280.611 11.023 291.963
Warping 13.299 0.930 14.244
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
| name | user | system | elapsed | |
| Apodization | 0.690 | 0.070 | 0.763 | |
| BaselineCorrection | 0.606 | 0.103 | 0.710 | |
| Bucketing | 0.103 | 0.004 | 0.106 | |
| Draw | 1.397 | 0.067 | 1.467 | |
| DrawPCA | 0.791 | 0.027 | 0.823 | |
| DrawSignal | 0.758 | 0.021 | 0.781 | |
| FirstOrderPhaseCorrection | 0.043 | 0.002 | 0.045 | |
| FourierTransform | 0.031 | 0.004 | 0.034 | |
| GroupDelayCorrection | 0.059 | 0.019 | 0.077 | |
| InternalReferencing | 0.042 | 0.004 | 0.044 | |
| NegativeValuesZeroing | 0.025 | 0.005 | 0.030 | |
| Normalization | 0.010 | 0.001 | 0.011 | |
| PEPSNMR-package | 281.265 | 11.622 | 293.331 | |
| PreprocessingChain | 280.611 | 11.023 | 291.963 | |
| ReadFids | 0.344 | 0.034 | 0.379 | |
| RegionRemoval | 0.010 | 0.001 | 0.010 | |
| SolventSuppression | 0.124 | 0.048 | 0.172 | |
| Warping | 13.299 | 0.930 | 14.244 | |
| WindowSelection | 0.042 | 0.001 | 0.042 | |
| ZeroFilling | 0.379 | 0.026 | 0.405 | |
| ZeroOrderPhaseCorrection | 0.093 | 0.000 | 0.093 | |
| ZoneAggregation | 0.380 | 0.121 | 0.504 | |