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BUILD BIN report for PGA on tokay1

This page was generated on 2021-05-06 12:32:44 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the PGA package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1331/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGA 1.20.0  (landing page)
Bo Wen , Shaohang Xu
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/PGA
Branch: RELEASE_3_12
Last Commit: 4e7418a
Last Changed Date: 2020-10-27 11:05:59 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: PGA
Version: 1.20.0
Command: rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.20.0.tar.gz
StartedAt: 2021-05-06 09:44:57 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:46:20 -0400 (Thu, 06 May 2021)
EllapsedTime: 82.4 seconds
RetCode: 0
Status:   OK   
PackageFile: PGA_1.20.0.zip
PackageFileSize: 4.115 MiB

Command output

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###
### Running command:
###
###   rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.20.0.tar.gz
###
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install for i386

* installing *source* package 'PGA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13 
** help
*** installing help indices
  converting help for package 'PGA'
    finding HTML links ... done
    PrepareAnnotationEnsembl2               html  
    finding level-2 HTML links ... done

    PrepareAnnotationRefseq2                html  
    addGeneName4Ensembl                     html  
    buildFusionProteinDB                    html  
    createProDB4DenovoRNASeq                html  
    dbCreator                               html  
    easyRun                                 html  
    parserGear                              html  
    reportGear                              html  
    runTandem                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PGA' ...
** testing if installed package can be loaded
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'PGA' as PGA_1.20.0.zip
* DONE (PGA)