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This page was generated on 2021-05-06 12:32:26 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the NanoMethViz package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1197/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NanoMethViz 1.0.0 (landing page) Shian Su
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: NanoMethViz |
| Version: 1.0.0 |
| Command: rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.0.0.tar.gz |
| StartedAt: 2021-05-06 09:37:25 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:38:50 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 84.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: NanoMethViz_1.0.0.zip |
| PackageFileSize: 3.199 MiB |
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### Running command:
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### rm -rf NanoMethViz.buildbin-libdir && mkdir NanoMethViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NanoMethViz.buildbin-libdir NanoMethViz_1.0.0.tar.gz
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install for i386
* installing *source* package 'NanoMethViz' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
utils.cpp: In function 'std::__cxx11::string timestamp()':
utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=]
strftime(time_str, sizeof(time_str), "%F %T", localtime(&t));
^~~~~~~
utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=]
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NanoMethViz.buildbin-libdir/00LOCK-NanoMethViz/00new/NanoMethViz/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'NanoMethViz'
finding HTML links ... done
NanoMethResult-class html
NanoMethViz-package html
bsseq_to_edger html
bsseq_to_log_methy_ratio html
convert_methy_format html
create_tabix_file html
exons html
get_exons_homo_sapiens html
get_exons_mus_musculus html
load_example_nanomethresult html
methy html
methy_col_names html
methy_to_bsseq html
plot_agg_regions html
plot_agg_regions_sample_grouped html
plot_gene html
plot_grange html
plot_region html
query_exons html
query_methy html
raw_methy_to_tabix html
samples html
sort_methy_file html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'NanoMethViz' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
utils.cpp: In function 'std::__cxx11::string timestamp()':
utils.cpp:16:42: warning: unknown conversion type character 'F' in format [-Wformat=]
strftime(time_str, sizeof(time_str), "%F %T", localtime(&t));
^~~~~~~
utils.cpp:16:42: warning: unknown conversion type character 'T' in format [-Wformat=]
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o NanoMethViz.dll tmp.def RcppExports.o convert_methy_to_dss.o utils.o -LC:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/NanoMethViz.buildbin-libdir/NanoMethViz/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NanoMethViz' as NanoMethViz_1.0.0.zip
* DONE (NanoMethViz)