Britta Velten
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/MOFA2 |
| Branch: RELEASE_3_12 |
| Last Commit: 1b28109 |
| Last Changed Date: 2020-11-03 01:58:41 -0400 (Tue, 03 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:19 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the MOFA2 package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1134/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOFA2 1.0.1 (landing page) Britta Velten
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOFA2 |
| Version: 1.0.1 |
| Command: rm -rf MOFA2.buildbin-libdir && mkdir MOFA2.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MOFA2.buildbin-libdir MOFA2_1.0.1.tar.gz |
| StartedAt: 2021-05-06 09:33:49 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:34:26 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 37.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MOFA2_1.0.1.zip |
| PackageFileSize: 2.948 MiB |
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### Running command:
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### rm -rf MOFA2.buildbin-libdir && mkdir MOFA2.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MOFA2.buildbin-libdir MOFA2_1.0.1.tar.gz
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* installing *source* package 'MOFA2' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'rownames' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames' from package 'base' in package 'MOFA2'
Creating a generic function for 'nrow' from package 'base' in package 'MOFA2'
Creating a generic function for 'ncol' from package 'base' in package 'MOFA2'
Creating a generic function for 'rownames<-' from package 'base' in package 'MOFA2'
Creating a generic function for 'colnames<-' from package 'base' in package 'MOFA2'
** help
*** installing help indices
converting help for package 'MOFA2'
finding HTML links ... done
MOFA html
calculate_variance_explained html
cluster_samples html
compare_elbo html
finding level-2 HTML links ... done
compare_factors html
correlate_factors_with_covariates html
create_mofa html
create_mofa_from_MultiAssayExperiment html
create_mofa_from_Seurat html
create_mofa_from_SingleCellExperiment html
create_mofa_from_df html
create_mofa_from_matrix html
factors_names html
features_metadata html
features_names html
get_data html
get_default_data_options html
get_default_model_options html
get_default_stochastic_options html
get_default_training_options html
get_dimensions html
get_elbo html
get_expectations html
get_factors html
get_imputed_data html
get_variance_explained html
get_weights html
groups_names html
impute html
load_model html
make_example_data html
pipe html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6Ncon2/R.INSTALL40d47b265fa/MOFA2/man/pipe.Rd:6: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6Ncon2/R.INSTALL40d47b265fa/MOFA2/man/pipe.Rd:20: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6Ncon2/R.INSTALL40d47b265fa/MOFA2/man/pipe.Rd:11: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6Ncon2/R.INSTALL40d47b265fa/MOFA2/man/pipe.Rd:13: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
plot_ascii_data html
plot_data_heatmap html
plot_data_overview html
plot_data_scatter html
plot_dimred html
plot_enrichment html
plot_enrichment_detailed html
plot_enrichment_heatmap html
plot_factor html
plot_factor_cor html
plot_factors html
plot_top_weights html
plot_variance_explained html
plot_variance_explained_per_feature html
plot_weights html
plot_weights_heatmap html
plot_weights_scatter html
predict html
prepare_mofa html
run_enrichment html
run_mofa html
run_tsne html
run_umap html
samples_metadata html
samples_names html
select_model html
subset_factors html
subset_features html
subset_groups html
subset_samples html
subset_views html
summarise_factors html
views_names html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MOFA2' as MOFA2_1.0.1.zip
* DONE (MOFA2)