##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/KnowSeq_1.4.5.tar.gz && rm -rf KnowSeq.buildbin-libdir && mkdir KnowSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KnowSeq.buildbin-libdir KnowSeq_1.4.5.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL KnowSeq_1.4.5.zip && rm KnowSeq_1.4.5.tar.gz KnowSeq_1.4.5.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3924k  100 3924k    0     0  54.8M      0 --:--:-- --:--:-- --:--:-- 55.5M

install for i386

* installing *source* package 'KnowSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
In .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
  converting help for package 'KnowSeq'
    finding HTML links ... done
    DEGsEvidences                           html  
    DEGsExtraction                          html  
    DEGsToDiseases                          html  
    DEGsToPathways                          html  
    RNAseqQA                                html  
    batchEffectRemoval                      html  
    calculateGeneExpressionValues           html  
    countsToMatrix                          html  
    dataPlot                                html  
    downloadPublicSeries                    html  
    featureSelection                        html  
    fileMove                                html  
    gdcClientDownload                       html  
    geneOntologyEnrichment                  html  
    getGenesAnnotation                      html  
    hisatAlignment                          html  
    knn_test                                html  
    knn_trn                                 html  
    knowseqReport                           html  
    plotConfMatrix                          html  
    rawAlignment                            html  
    rf_test                                 html  
    rf_trn                                  html  
    sraToFastq                              html  
    svm_test                                html  
    svm_trn                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KnowSeq' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'KnowSeq' as KnowSeq_1.4.5.zip
* DONE (KnowSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'KnowSeq' successfully unpacked and MD5 sums checked