| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:27:52 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the HilbertCurve package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 834/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HilbertCurve 1.20.0 (landing page) Zuguang Gu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: HilbertCurve |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings HilbertCurve_1.20.0.tar.gz |
| StartedAt: 2021-05-06 02:26:16 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 02:29:28 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 191.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HilbertCurve.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings HilbertCurve_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/HilbertCurve.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 18.112 0.156 18.976
hc_layer-GenomicHilbertCurve-method 12.260 0.076 13.470
GenomicHilbertCurve 11.152 0.060 13.310
hc_png-HilbertCurve-method 5.868 0.056 5.932
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘HilbertCurve.Rmd’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
>
> proc.time()
user system elapsed
5.636 0.216 5.864
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
| name | user | system | elapsed | |
| GenomicHilbertCurve-class | 0 | 0 | 0 | |
| GenomicHilbertCurve | 11.152 | 0.060 | 13.310 | |
| HilbertCurve-class | 0 | 0 | 0 | |
| HilbertCurve | 0.684 | 0.016 | 0.703 | |
| default_overlay | 0.000 | 0.000 | 0.001 | |
| hc_centered_text-HilbertCurve-method | 0.172 | 0.000 | 0.173 | |
| hc_layer-GenomicHilbertCurve-method | 12.260 | 0.076 | 13.470 | |
| hc_layer-HilbertCurve-method | 18.112 | 0.156 | 18.976 | |
| hc_layer-dispatch | 0.000 | 0.000 | 0.001 | |
| hc_level-HilbertCurve-method | 0.036 | 0.004 | 0.040 | |
| hc_map-GenomicHilbertCurve-method | 4.904 | 0.008 | 4.918 | |
| hc_normal_points-HilbertCurve-method | 0.000 | 0.000 | 0.001 | |
| hc_offset-HilbertCurve-method | 0.012 | 0.000 | 0.014 | |
| hc_png-HilbertCurve-method | 5.868 | 0.056 | 5.932 | |
| hc_points-GenomicHilbertCurve-method | 0.620 | 0.000 | 0.621 | |
| hc_points-HilbertCurve-method | 0.984 | 0.008 | 0.991 | |
| hc_points-dispatch | 0 | 0 | 0 | |
| hc_polygon-GenomicHilbertCurve-method | 0.784 | 0.000 | 0.787 | |
| hc_polygon-HilbertCurve-method | 0.196 | 0.004 | 0.200 | |
| hc_polygon-dispatch | 0.000 | 0.000 | 0.001 | |
| hc_rect-GenomicHilbertCurve-method | 0.512 | 0.000 | 0.510 | |
| hc_rect-HilbertCurve-method | 0.148 | 0.000 | 0.149 | |
| hc_rect-dispatch | 0 | 0 | 0 | |
| hc_segmented_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_segments-GenomicHilbertCurve-method | 1.012 | 0.008 | 1.025 | |
| hc_segments-HilbertCurve-method | 0.200 | 0.004 | 0.204 | |
| hc_segments-dispatch | 0 | 0 | 0 | |
| hc_text-GenomicHilbertCurve-method | 0.352 | 0.000 | 0.353 | |
| hc_text-HilbertCurve-method | 0.116 | 0.000 | 0.114 | |
| hc_text-dispatch | 0 | 0 | 0 | |
| is_white | 0 | 0 | 0 | |
| show-HilbertCurve-method | 0.012 | 0.000 | 0.012 | |
| unzoom-HilbertCurve-method | 0.012 | 0.000 | 0.011 | |
| zoom-HilbertCurve-method | 0.012 | 0.000 | 0.011 | |