##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL GeneSelectMMD
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c Qfunc.f -o Qfunc.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c blas.f -o blas.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c isnan.c -o isnan.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1491:0:

                t(nbreak) = tu/neggi
 
Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:0:

                t(nbreak) = tl/(-neggi)
 
Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c linpack.f -o linpack.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c llkhFun.f -o llkhFun.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c myTtest.f -o myTtest.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c paraEstLoop.f -o paraEstLoop.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c pt.c -o pt.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c timer.f -o timer.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c wiFun.f -o wiFun.o
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)