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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GWAS.BAYES
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* checking for file ‘GWAS.BAYES/DESCRIPTION’ ... OK
* preparing ‘GWAS.BAYES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VignetteGWASBAYES.Rmd’ using rmarkdown
Loading required package: Rcpp
Loading required package: RcppEigen
Loading required package: GA
Loading required package: foreach
Loading required package: iterators
Package 'GA' version 3.2.1
Type 'citation("GA")' for citing this R package in publications.

Attaching package: 'GA'

The following object is masked from 'package:utils':

    de

Loading required package: caret
Loading required package: lattice
Loading required package: ggplot2
Loading required package: doParallel
Loading required package: parallel
Loading required package: memoise
Loading required package: reshape2
Loading required package: Matrix

For example usage please run: vignette('qqman')

Citation appreciated but not required:
Turner, (2018). qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. Journal of Open Source Software, 3(25), 731, https://doi.org/10.21105/joss.00731.


Attaching package: 'qqman'

The following object is masked from 'package:lattice':

    qq

Warning in manhattan(Significant_SNPs, chr = "Chromosomes", bp = "Positions",  :
  No SNP column found. OK unless you're trying to highlight.
Quitting from lines 437-441 (VignetteGWASBAYES.Rmd) 
Error: processing vignette 'VignetteGWASBAYES.Rmd' failed with diagnostics:
arguments must have same length
--- failed re-building ‘VignetteGWASBAYES.Rmd’

SUMMARY: processing the following file failed:
  ‘VignetteGWASBAYES.Rmd’

Error: Vignette re-building failed.
Execution halted