Benjamin Haibe-Kains
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/CoreGx |
| Branch: RELEASE_3_12 |
| Last Commit: e2021c4 |
| Last Changed Date: 2020-10-27 11:57:03 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:29 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the CoreGx package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 379/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CoreGx 1.2.0 (landing page) Benjamin Haibe-Kains
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CoreGx |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CoreGx_1.2.0.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.2.0.zip && rm CoreGx_1.2.0.tar.gz CoreGx_1.2.0.zip |
| StartedAt: 2021-05-05 17:41:35 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:42:50 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 74.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CoreGx_1.2.0.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.2.0.zip && rm CoreGx_1.2.0.tar.gz CoreGx_1.2.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1526k 100 1526k 0 0 15.1M 0 --:--:-- --:--:-- --:--:-- 15.2M
install for i386
* installing *source* package 'CoreGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Registered S3 method overwritten by 'ggplot2':
method from
print.element sets
Creating a generic function for 'colnames' from package 'base' in package 'CoreGx'
Creating a generic function for 'rownames' from package 'base' in package 'CoreGx'
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'colnames' from package 'base' in package 'CoreGx'
Creating a generic function for 'rownames' from package 'base' in package 'CoreGx'
** help
*** installing help indices
converting help for package 'CoreGx'
finding HTML links ... done
CoreSet-class html
CoreSet html
Create html
LongTable-class html
LongTable html
RadioSet html
amcc html
as html
as.data.frame.LongTable html
as.data.table.LongTable html
as.long.table html
assayCols html
buildLongTable html
callingWaterfall html
cash-LongTable-method html
cellInfo-set html
cellInfo html
cellNames-set html
cellNames html
checkCsetStructure html
clevelandSmall_cSet html
colIDs html
colMeta html
connectivityScore html
cosinePerm html
curation-set html
curation html
datasetType-set html
datasetType html
dateCreated-set html
dateCreated html
dot- html
dot-convertCSetMolecularProfilesToSE html
dot-distancePointLine html
dot-distancePointSegment html
dot-intersectList html
dot-symSetDiffList html
dot-unionList html
drugSensitivitySig html
fNames-set html
fNames html
featureInfo-set html
featureInfo html
getIntern html
gwc html
idCols-LongTable-method html
idCols html
is.items html
list_or_LongTable-class html
mDataNames-set html
mDataNames html
mcc html
merckLongTable html
metadata-LongTable-method html
metadata-set-LongTable-method html
molecularProfiles-set html
molecularProfiles html
molecularProfilesSlot-set html
molecularProfilesSlot html
name-set html
name html
pertNumber-set html
pertNumber html
phenoInfo-set html
phenoInfo html
reindex-LongTable-method html
reindex html
rowIDs html
rowMeta html
sensNumber-set html
sensNumber html
sensitivityInfo-set html
sensitivityInfo html
sensitivityMeasures-set html
sensitivityMeasures html
sensitivityProfiles-set html
sensitivityProfiles html
sensitivityRaw-set html
sensitivityRaw html
sensitivitySlot-set html
sensitivitySlot html
sensitivitySlotToLongTable html
show-CoreSet-method html
show-LongTable-method html
showSigAnnot html
sub-LongTable-ANY-ANY-ANY-method html
subset-LongTable-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
updateCellId html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CoreGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoreGx' as CoreGx_1.2.0.zip
* DONE (CoreGx)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CoreGx' successfully unpacked and MD5 sums checked