Cuilan lani Gao
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/AGDEX |
| Branch: RELEASE_3_12 |
| Last Commit: 7e2c1f5 |
| Last Changed Date: 2020-10-27 10:43:00 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:29:51 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the AGDEX package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 37/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AGDEX 1.38.0 (landing page) Cuilan lani Gao
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AGDEX |
| Version: 1.38.0 |
| Command: rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.38.0.tar.gz |
| StartedAt: 2021-05-06 08:24:22 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 08:24:43 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 21.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: AGDEX_1.38.0.zip |
| PackageFileSize: 629.8 KiB |
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### Running command:
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### rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.38.0.tar.gz
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install for i386
* installing *source* package 'AGDEX' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AGDEX'
finding HTML links ... done
AGDEX-package html
agdex html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/agdex.Rd:91: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/agdex.Rd:93: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
agdex.res html
agdex.scatterplot html
get.gset.result.details html
gset.data html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/gset.data.Rd:24: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
human.data html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/human.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
make.dex.set.object html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/make.dex.set.object.Rd:37: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/make.dex.set.object.Rd:39: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
map.data html
mouse.data html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0CW1yP/R.INSTALLe34262f356e/AGDEX/man/mouse.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
read.agdex.gset.details html
read.agdex.result html
write.agdex.gset.details html
write.agdex.result html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AGDEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AGDEX' as AGDEX_1.38.0.zip
* DONE (AGDEX)