| Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:45:45 -0400 (Thu, 15 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cnvGSAdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 67/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| cnvGSAdata 1.24.0 Joseph Lugo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ WARNINGS ] |
| Package: cnvGSAdata |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings cnvGSAdata_1.24.0.tar.gz |
| StartedAt: 2020-10-15 13:07:56 -0400 (Thu, 15 Oct 2020) |
| EndedAt: 2020-10-15 13:09:01 -0400 (Thu, 15 Oct 2020) |
| EllapsedTime: 64.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: cnvGSAdata.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings cnvGSAdata_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/cnvGSAdata.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK
* this is package ‘cnvGSAdata’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cnvGSAdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.1Mb
sub-directories of 1Mb or more:
data 5.2Mb
extdata 3.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
cnvGSA_input_example.RData 2.4Mb 1.2Mb xz
cnvGSA_output_example.RData 2.5Mb 768Kb xz
gs_data_example.RData 310Kb 207Kb xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.11-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’
for details.
cnvGSAdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL cnvGSAdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘cnvGSAdata’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cnvGSAdata)
cnvGSAdata.Rcheck/cnvGSAdata-Ex.timings
| name | user | system | elapsed | |
| cnv_AGP_demo.txt | 0.046 | 0.003 | 0.730 | |
| enrGMT_AGP_demo.gmt | 1.673 | 0.068 | 2.400 | |
| enrGeneric_AGP_demo.txt | 0.002 | 0.000 | 0.087 | |
| gene_ID_demo.txt | 0.187 | 0.000 | 0.724 | |
| kl_gene_AGP_demo.txt | 0.002 | 0.000 | 0.331 | |
| kl_loci_AGP_demo.txt | 0.002 | 0.000 | 0.299 | |
| ph_AGP_demo.txt | 0.013 | 0.000 | 0.548 | |