Jean Fan
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/scde |
| Branch: RELEASE_3_10 |
| Last Commit: b652503 |
| Last Changed Date: 2019-10-29 13:09:30 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:10:42 -0400 (Wed, 15 Apr 2020).
| Package 1529/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scde 2.14.0 Jean Fan
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: scde |
| Version: 2.14.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL scde |
| StartedAt: 2020-04-14 18:31:26 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:32:27 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 61.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL scde
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘scde’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c bwpca.cpp -o bwpca.o
bwpca.cpp: In function ‘void set_random_matrix(arma::mat&, arma::mat&)’:
bwpca.cpp:23:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int j=0;j<target.n_rows;j++) {
~^~~~~~~~~~~~~~
bwpca.cpp:27:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0;i<target.n_cols;i++) {
~^~~~~~~~~~~~~~
bwpca.cpp:30:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int j=0;j<target.n_rows;j++) {
~^~~~~~~~~~~~~~
bwpca.cpp: In function ‘void set_random_matrices(arma::mat&, arma::mat&, arma::mat&, arma::mat&)’:
bwpca.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int j=0;j<target1.n_rows;j++) {
~^~~~~~~~~~~~~~~
bwpca.cpp:44:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0;i<target1.n_cols;i++) {
~^~~~~~~~~~~~~~~
bwpca.cpp:47:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int j=0;j<target1.n_rows;j++) {
~^~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c jpmatLogBoot.cpp -o jpmatLogBoot.o
jpmatLogBoot.cpp: In function ‘SEXPREC* logBootPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
jpmatLogBoot.cpp:200:24: warning: unused variable ‘maxv’ [-Wunused-variable]
double maxv=nbp.max(maxij);
^~~~
jpmatLogBoot.cpp: In function ‘SEXPREC* logBootBatchPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
jpmatLogBoot.cpp:443:10: warning: unused variable ‘maxv’ [-Wunused-variable]
double maxv=nbp.max(maxij);
^~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c matSlideMult.cpp -o matSlideMult.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c pagoda.cpp -o pagoda.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o scde.so bwpca.o jpmatLogBoot.o matSlideMult.o pagoda.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.10-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-scde/00new/scde/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scde)