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BUILD BIN report for iBMQ on tokay1

This page was generated on 2020-04-15 12:21:14 -0400 (Wed, 15 Apr 2020).

Package 814/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iBMQ 1.26.0
Greg Imholte
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/iBMQ
Branch: RELEASE_3_10
Last Commit: 15769c7
Last Changed Date: 2019-10-29 13:08:36 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64 ...NOT SUPPORTED...

Summary

Package: iBMQ
Version: 1.26.0
Command: rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.26.0.tar.gz
StartedAt: 2020-04-15 08:57:21 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:58:12 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 50.6 seconds
RetCode: 0
Status:  OK  
PackageFile: iBMQ_1.26.0.zip
PackageFileSize: 2.585 MiB

Command output

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###
### Running command:
###
###   rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.26.0.tar.gz
###
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install for i386

* installing *source* package 'iBMQ' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c ARS.c -o ARS.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c RngStream.c -o RngStream.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Cfile);
   ^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Sig2file);
   ^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Mufile);
   ^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Bfile);
   ^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Afile);
   ^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Pfile);
   ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c sparse.c -o sparse.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/i386/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/iBMQ.buildbin-libdir/00LOCK-iBMQ/00new/iBMQ/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iBMQ'
    finding HTML links ... done
    PPA.liver                               html  
    calculateThreshold                      html  
    eqtlClassifier                          html  
    eqtlFinder                              html  
    eqtlMcmc                                html  
    gene                                    html  
    genepos                                 html  
    genotype.liver                          html  
    hotspotFinder                           html  
    iBMQ-package                            html  
    map.liver                               html  
    phenotype.liver                         html  
    probe.liver                             html  
    snp                                     html  
    snppos                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iBMQ' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ARS.c -o ARS.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c RngStream.c -o RngStream.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Cfile);
   ^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Sig2file);
   ^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Mufile);
   ^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Bfile);
   ^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Afile);
   ^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
   fclose(Pfile);
   ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c sparse.c -o sparse.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iBMQ' as iBMQ_1.26.0.zip
* DONE (iBMQ)