Michael Lawrence
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/biovizBase |
| Branch: RELEASE_3_10 |
| Last Commit: 98962be |
| Last Changed Date: 2019-12-03 19:03:11 -0400 (Tue, 03 Dec 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:06:36 -0400 (Wed, 15 Apr 2020).
| Package 180/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| biovizBase 1.34.1 Michael Lawrence
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: biovizBase |
| Version: 1.34.1 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL biovizBase |
| StartedAt: 2020-04-14 19:12:57 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:13:34 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 37.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL biovizBase
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘biovizBase’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c bin_offsets.c -o bin_offsets.o
bin_offsets.c: In function ‘scan_bam_bin_offsets’:
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of ‘strncmp’ differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
In file included from /home/biocbuild/bbs-3.10-bioc/R/include/R_ext/RS.h:34:0,
from /home/biocbuild/bbs-3.10-bioc/R/include/Rdefines.h:37,
from bin_offsets.h:1,
from bin_offsets.c:3:
/usr/include/string.h:139:12: note: expected ‘const char *’ but argument is of type ‘Rbyte * {aka unsigned char *}’
extern int strncmp (const char *__s1, const char *__s2, size_t __n)
^~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o biovizBase.so R_init_biovizBase.o bin_offsets.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-biovizBase/00new/biovizBase/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biovizBase)