Renan Sauteraud
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/XCIR |
| Branch: RELEASE_3_10 |
| Last Commit: c20f64b |
| Last Changed Date: 2019-10-29 13:11:42 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:49:31 -0400 (Wed, 15 Apr 2020).
| Package 1809/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| XCIR 1.0.0 Renan Sauteraud
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: XCIR |
| Version: 1.0.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:XCIR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings XCIR_1.0.0.tar.gz |
| StartedAt: 2020-04-15 06:28:44 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:35:00 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 376.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: XCIR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:XCIR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings XCIR_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/XCIR.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘XCIR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘XCIR’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘XCIR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
betaBinomXI 73.860 81.201 18.182
getXCIstate 53.329 101.248 19.309
plotQC 60.810 93.004 17.931
sample_clean 56.923 96.506 18.757
readRNASNPs 6.137 4.497 7.109
annotateX 5.996 4.076 7.966
getGenicDP 4.600 5.232 5.778
readVCF4 4.224 5.447 5.812
addAnno 6.391 3.200 5.524
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
XCIR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL XCIR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘XCIR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XCIR)
XCIR.Rcheck/XCIR-Ex.timings
| name | user | system | elapsed | |
| BetaConversion | 0.000 | 0.000 | 0.001 | |
| addAnno | 6.391 | 3.200 | 5.524 | |
| annotateX | 5.996 | 4.076 | 7.966 | |
| betaBinomXI | 73.860 | 81.201 | 18.182 | |
| consensusXCI | 1.196 | 1.489 | 0.347 | |
| getGenicDP | 4.600 | 5.232 | 5.778 | |
| getXCIstate | 53.329 | 101.248 | 19.309 | |
| mart_genes | 1.356 | 1.109 | 4.533 | |
| plotQC | 60.810 | 93.004 | 17.931 | |
| readRNASNPs | 6.137 | 4.497 | 7.109 | |
| readVCF4 | 4.224 | 5.447 | 5.812 | |
| readXCI | 0.007 | 0.007 | 0.002 | |
| sample_clean | 56.923 | 96.506 | 18.757 | |