August Guang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/RSeqAn |
| Branch: RELEASE_3_10 |
| Last Commit: de2b9d9 |
| Last Changed Date: 2019-10-29 13:11:08 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:47:15 -0400 (Wed, 15 Apr 2020).
| Package 1484/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RSeqAn 1.6.0 August Guang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped |
| Package: RSeqAn |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn |
| StartedAt: 2020-04-14 22:58:54 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 22:59:23 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 28.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn
###
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* checking for file ‘RSeqAn/DESCRIPTION’ ... OK
* preparing ‘RSeqAn’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘first_example.Rmd’ using rmarkdown
Building shared library for Rcpp code chunk...
In file included from file13d2d1e229267.cpp:4:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/file.h:68:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/modifier.h:48:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel.h:94:
/private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available.
^
/usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
^
In file included from file13d2d1e229267.cpp:4:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/file.h:68:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/modifier.h:48:
In file included from /private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel.h:94:
/private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
std::shared_timed_mutex _mutex{}; // TODO(rrahn): Replace by shared_mutex when c++17 is available.
^
/usr/local/clang7/include/c++/v1/shared_mutex:204:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
^
2 errors generated.
make: *** [file13d2d1e229267.o] Error 1
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/private/tmp/RtmpbR7ju7/Rinst13bd77b5d3afc/RSeqAn/include" -I"/private/tmp/RtmpnptpWZ/sourceCpp-x86_64-apple-darwin15.6.0-1.0.4.6" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -std=c++14 -fPIC -Wall -g -O2 -c file13d2d1e229267.cpp -o file13d2d1e229267.o
Quitting from lines 53-93 (first_example.Rmd)
Error: processing vignette 'first_example.Rmd' failed with diagnostics:
Error 1 occurred building shared library.
--- failed re-building ‘first_example.Rmd’
SUMMARY: processing the following file failed:
‘first_example.Rmd’
Error: Vignette re-building failed.
Execution halted