Koustav Pal
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/HiCBricks |
| Branch: RELEASE_3_10 |
| Last Commit: cf9b736 |
| Last Changed Date: 2019-10-29 13:11:24 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:31:19 -0400 (Wed, 15 Apr 2020).
| Package 783/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HiCBricks 1.4.0 Koustav Pal
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: HiCBricks |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HiCBricks_1.4.0.tar.gz |
| StartedAt: 2020-04-15 03:52:23 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:00:34 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 490.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings HiCBricks_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/HiCBricks.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 2.44 0.45 8.35
Brick_fetch_row_vector 1.79 0.59 9.85
BrickContainer_unlink_resolution 1.64 0.30 12.25
Brick_get_matrix_within_coords 1.50 0.41 13.35
Brick_call_compartments 1.28 0.38 10.19
Brick_matrix_dimensions 1.26 0.40 7.00
Brick_matrix_maxdist 1.11 0.53 5.13
Brick_get_entire_matrix 1.18 0.36 5.57
Brick_matrix_exists 1.18 0.32 8.99
Brick_get_vector_values 1.10 0.39 8.42
Brick_get_matrix_mcols 0.86 0.39 21.01
Create_many_Bricks 0.95 0.23 9.92
Brick_get_bintable 0.64 0.18 7.93
Brick_list_rangekeys 0.66 0.12 5.03
Brick_get_ranges 0.60 0.09 5.79
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 3.21 0.51 5.61
Brick_call_compartments 1.61 0.52 10.65
BrickContainer_unlink_resolution 1.67 0.26 5.06
Brick_add_ranges 1.50 0.22 7.74
BrickContainer_change_experiment_name 0.98 0.14 11.91
BrickContainer_list_resolutions 0.81 0.08 6.33
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HiCBricks_1.4.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.4.0.zip && rm HiCBricks_1.4.0.tar.gz HiCBricks_1.4.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2313k 100 2313k 0 0 30.1M 0 --:--:-- --:--:-- --:--:-- 31.8M
install for i386
* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HiCBricks'
finding HTML links ... done
BrickContainer_change_experiment_name html
BrickContainer_change_output_directory
html
BrickContainer_get_path_to_file html
BrickContainer_list_chromosomes html
BrickContainer_list_experiment_name html
BrickContainer_list_files html
BrickContainer_list_output_directory html
BrickContainer_list_resolutions html
BrickContainer_unlink_resolution html
Brick_add_ranges html
Brick_call_compartments html
Brick_export_to_sparse html
Brick_fetch_range_index html
Brick_fetch_row_vector html
Brick_get_bintable html
Brick_get_chrominfo html
Brick_get_entire_matrix html
Brick_get_matrix html
Brick_get_matrix_mcols html
Brick_get_matrix_within_coords html
Brick_get_ranges html
Brick_get_values_by_distance html
Brick_get_vector_values html
Brick_list_matrices html
Brick_list_matrix_mcols html
Brick_list_mcool_normalisations html
Brick_list_mcool_resolutions html
Brick_list_rangekeys html
Brick_list_ranges_mcols html
Brick_load_cis_matrix_till_distance html
Brick_load_data_from_mcool html
Brick_load_matrix html
Brick_local_score_differentiator html
Brick_make_ranges html
Brick_matrix_dimensions html
Brick_matrix_exists html
Brick_matrix_filename html
Brick_matrix_isdone html
Brick_matrix_issparse html
Brick_matrix_maxdist html
Brick_matrix_minmax html
Brick_mcool_normalisation_exists html
Brick_rangekey_exists html
Brick_return_region_position html
Brick_vizart_plot_heatmap html
Create_many_Bricks html
Create_many_Bricks_from_mcool html
HiCBricks html
load_BrickContainer html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCBricks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCBricks' as HiCBricks_1.4.0.zip
* DONE (HiCBricks)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'HiCBricks' successfully unpacked and MD5 sums checked
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HiCBricks.Rcheck/examples_i386/HiCBricks-Ex.timings
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HiCBricks.Rcheck/examples_x64/HiCBricks-Ex.timings
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