Package: GEOmetadb

Version: 1.48.2

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GEOmetadb_1.48.2.tar.gz && rm -rf GEOmetadb.buildbin-libdir && mkdir GEOmetadb.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOmetadb.buildbin-libdir GEOmetadb_1.48.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GEOmetadb_1.48.2.zip && rm GEOmetadb_1.48.2.tar.gz GEOmetadb_1.48.2.zip

StartedAt: 2020-04-14 19:20:37 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 19:21:11 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 33.9 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GEOmetadb_1.48.2.tar.gz && rm -rf GEOmetadb.buildbin-libdir && mkdir GEOmetadb.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOmetadb.buildbin-libdir GEOmetadb_1.48.2.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GEOmetadb_1.48.2.zip && rm GEOmetadb_1.48.2.tar.gz GEOmetadb_1.48.2.zip
###
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install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'GEOmetadb/vignettes/GEOmetadb.Rmd' to 'GEOmetadb/README.md'
* installing *source* package 'GEOmetadb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmgJqMD/R.INSTALL144c7f9c5733/GEOmetadb/man/GEOmetadb-package.Rd:52: unexpected END_OF_INPUT '
'
Warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmgJqMD/R.INSTALL144c7f9c5733/GEOmetadb/man/columnDescriptions.Rd:34: unexpected END_OF_INPUT '
'
Warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmgJqMD/R.INSTALL144c7f9c5733/GEOmetadb/man/geoConvert.Rd:38: unexpected section header '\keyword'
Warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmgJqMD/R.INSTALL144c7f9c5733/GEOmetadb/man/getBiocPlatformMap.Rd:36: unexpected END_OF_INPUT '
'
Warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpmgJqMD/R.INSTALL144c7f9c5733/GEOmetadb/man/getSQLiteFile.Rd:37: unexpected section header '\keyword'
*** installing help indices
  converting help for package 'GEOmetadb'
    finding HTML links ... done
    GEOmetadb-package                       html  
    columnDescriptions                      html  
    geoConvert                              html  
    getBiocPlatformMap                      html  
    getSQLiteFile                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'GEOmetadb/vignettes/GEOmetadb.Rmd' to 'GEOmetadb/README.md'
* installing *source* package 'GEOmetadb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GEOmetadb' as GEOmetadb_1.48.2.zip
* DONE (GEOmetadb)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GEOmetadb' successfully unpacked and MD5 sums checked